Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01197 ATGGCCGGAGCATCTGAACATCCTAAACCCACCGAATCTCAGGCTTCCCCTGTTCCGCCGCCCTCCACGGAGGAGGAATCAAAGAAATGGGGGACACACGTTATGGGGCCGCCGGCGGCTCCCTCTGAGCATCCGGATAACCATAAGGCGGCGTTCTGGAACGCCGCGGACCAGCAGAAGATCCACCATCATCCGTACGTGCAATACTCGCCGGTGGATCATCGGCCGAGCACTAACCCGTTCGAGCCTGTGGTACACGCTTTCAATTCGTGGAGCAACAAAGCAGAGACTATGGCGCGCAACATCTGGCACAATCTGAGGACTGGACCGTCGATGTCCGAGGCGGCTTGGGGCAAATTGAACTTGACGGCGAAGGCTATAACGGAAGGCGGATTTGAGTCTCTGTTTAAGCAGACTTTCGCGACGGAGCCAAATGAGAAGCTGATGAAAAGCTTTGCTTGCTATCTCTCCACCGCGACGGGTCCGGTGGCCGGAACTCTGTATTTGTCGACGGCGCGTCTGGGTAATGATACCGCTGTCGCATATACCAGCAGTGAACCCAGTGACGATGCCGGGAAACCCATCGGCGAGGTACCTCCAGATCACCACCGTGGACGGCCATGA 624 57.21 MAGASEHPKPTESQASPVPPPSTEEESKKWGTHVMGPPAAPSEHPDNHKAAFWNAADQQKIHHHPYVQYSPVDHRPSTNPFEPVVHAFNSWSNKAETMARNIWHNLRTGPSMSEAAWGKLNLTAKAITEGGFESLFKQTFATEPNEKLMKSFACYLSTATGPVAGTLYLSTARLGNDTAVAYTSSEPSDDAGKPIGEVPPDHHRGRP 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9799414 9801411 + Cp4.1LG03g13070.1 Cpe03g01197 466914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01197 207 Pfam GRAM domain 135 174 IPR004182 -
Cpe03g01197 207 Gene3D - 132 181 IPR011993 -
Cpe03g01197 207 MobiDBLite consensus disorder prediction 180 207 - -
Cpe03g01197 207 PANTHER GEM-LIKE PROTEIN 5 15 175 - -
Cpe03g01197 207 MobiDBLite consensus disorder prediction 1 47 - -
Cpe03g01197 207 PANTHER GEM-LIKE PROTEIN 2 15 175 IPR037848 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01197 - - - csv:101221731 328.946
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01197 Cpe-Chr3:9799414 Cpe11g00464 Cpe-Chr11:2617916 2.77E-26 dispersed
Cpe03g01197 Cpe-Chr3:9799414 Cpe07g00187 Cpe-Chr7:1169053 2.41E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1330 . . . Bda11g00376 Bpe13g00825 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00260 . . Blo02g00203 . . Bda11g00376 Bpe14g00808 . . Bma06g01332 . . . . . . . . Cpe03g01197 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005307 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 3 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01197 Cpe_Chr03 FPKM 40.688179 40.090816 17.772408 16.289402 18.123745 19.679735 18.499252 10.907275 9.747877 11.442765