Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01198 ATGAAGAACAGTGGCAATGACAGTCTTGGCGCTGAAGATCGACAACCAAAAGAGAGCACAATCTCAAATCTCGATTCTAGATTCAATCAGACCCTAAAAAATGTACAAGGGCTGCTTAAAGGCCGCAGTATTCCTGGTAAAGTATTGCTAACTAGAAGAGCAGATGTGCTCGACTCCTCGAGTGTATCAGATCAACCGTCGAATTATTCAAGGAGCTTATCGGATAATGATACTGGTACAAGCAATCACATTGCCAAATCTGAGGAGGAAGATCTTCAGATTATAAATAATAATTCAATTGTTAATAAGTCAAAATCATCGACATCTAACACTGAGGATCTTACTAAAGAAGTCCAAAAGCCAATAATGGGTGCTAGAGCAACAGATTCTGCAAGGGTGATGAAGTTCACAACGCTGCTCTCGGGGACAACAATCATATTAGACAAGTTGCGGGAGCTAGCGTGGAGTGGCATTCCCCCATATATGCGCCCAAATATATGGAGGCTTCTTTTGGGCTATGCACCACCTAATTCAGATAGAAAGGAGGGAGTTCTACGGAGAAAGAGACTCGAGTATCTCGACAGCGTTGCACAGTTCTATGATGTTCCTGATACTGAACGTTCTGATGATGAGATAAACATGCTCCGCCAGATTGCTGTTGATTGTCCTAGAACTGTACCTGACGTTGCTTTCTTTCAACAAGCACAAGTTCAGAAATCTTTGGAGCGTATTCTCTATACTTGGGCTATTCGGCATCCTGCGAGTGGATACGTTCAGGGAATAAATGATCTTGCTACTCCATTTTTAGTTGTCTTCTTGTCAGAATACTTAGAAGGTGGTGTTGAGAAATGGTCCATCTCTGATCTATCTCCCGACAAGATCACAAACATTGAGGCCGATTGCTACTGGTGTCTTTCTAAATTGCTCGATGGTATGCAAGATCATTACACGTTTGCACAACCCGGAATTCAGAGGCTTGTATTTAAATTGAAGGAGCTGGTTAGGAGGATTGATGAACCTGTGTCAAGACACATGGAGGAGCAGGGTCTGGAATTTCTTCAATTCGCTTTTCGGTGGTTCAACTGTCTTCTGATACGCGAGATTCCTTTCCACCTTGTTACCCGGTTATGGGATACTTATCTTGCGGAAGGGGATTCATTGCCAGATTTCCTTGTCTACATATTTGCCAGTTTTCTTTTGACGTGGTCTGAGGAGCTGCAGAAACTTGATTTTCAAGAATTGGTGATGTTTCTCCAGCATGTTCCAACTCAAAACTGGACCCATCAAGAGCTTGAGATGGTGCTTTCAAGAGCATTCATGTGGCACAGTATGTTCAACAATTCTCCAAGACACCTTATTAGCTGA 1365 42.71 MKNSGNDSLGAEDRQPKESTISNLDSRFNQTLKNVQGLLKGRSIPGKVLLTRRADVLDSSSVSDQPSNYSRSLSDNDTGTSNHIAKSEEEDLQIINNNSIVNKSKSSTSNTEDLTKEVQKPIMGARATDSARVMKFTTLLSGTTIILDKLRELAWSGIPPYMRPNIWRLLLGYAPPNSDRKEGVLRRKRLEYLDSVAQFYDVPDTERSDDEINMLRQIAVDCPRTVPDVAFFQQAQVQKSLERILYTWAIRHPASGYVQGINDLATPFLVVFLSEYLEGGVEKWSISDLSPDKITNIEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRHMEEQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTYLAEGDSLPDFLVYIFASFLLTWSEELQKLDFQELVMFLQHVPTQNWTHQELEMVLSRAFMWHSMFNNSPRHLIS 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9802024 9807683 + Cp4.1LG03g13060.1 Cpe03g01198 466915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01198 454 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 320 442 IPR035969 -
Cpe03g01198 454 MobiDBLite consensus disorder prediction 57 81 - -
Cpe03g01198 454 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 134 344 IPR035969 -
Cpe03g01198 454 MobiDBLite consensus disorder prediction 1 25 - -
Cpe03g01198 454 Gene3D - 132 183 - -
Cpe03g01198 454 PANTHER GTPASE-ACTIVATING PROTEIN GYP1-LIKE 9 451 - -
Cpe03g01198 454 Gene3D - 319 454 - -
Cpe03g01198 454 MobiDBLite consensus disorder prediction 57 89 - -
Cpe03g01198 454 Pfam Rab-GTPase-TBC domain 162 406 IPR000195 -
Cpe03g01198 454 SMART tbc_4 154 410 IPR000195 -
Cpe03g01198 454 ProSiteProfiles TBC/rab GAP domain profile. 157 384 IPR000195 -
Cpe03g01198 454 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 9 451 - -
Cpe03g01198 454 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 196 318 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01198 K20360 TBC1D22, GYP1; TBC1 domain family member 2 - csv:101220794 832.402
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01198 Cpe-Chr3:9802024 Cpe08g00049 Cpe-Chr8:332835 0 dispersed
Cpe03g01198 Cpe-Chr3:9802024 Cpe17g00267 Cpe-Chr17:1758952 7.01E-29 transposed
Cpe03g01198 Cpe-Chr3:9802024 Cpe12g00072 Cpe-Chr12:426482 5.23E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1285 . . . . . . . . . . . Cma14g01425 . Car14g01255 . . Cpe03g01198 . . . . . . . . . . . . . . Cone14ag0625 Cone15ag0635 Cone18ag0862 Cone11ag0647 . . . Cme07g01957 . . . . . . . . . . Cmo14g01461 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005593 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 5 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01198 Cpe_Chr03 FPKM 5.384594 6.705045 6.126942 6.214543 9.577527 9.148535 10.41093 13.951826 13.770388 14.917377