Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01199 AGCCACATGGGGATGCCAACTGGGCAGCTATTTAAACCGAAGGTTCAAGATTTCGTTATCCGTTTCCCAACGGTGCCAACACCTTGCTCTCAATTTTCCATGGCGTCTTCCGCCTCCTCAATGTTGCTCCCGCTTGGTTCAGCTTCTGGAATACACCAAAGAATTTCCAGTGATAAAATACGACCTCTTGTTGTGCGCTGCTTGAATGCCAATATCAATGCAAAAGAATGGCGGATGAAAGAGTATGGGAAGGAACTCAATTTGACTAGAAGAAGAGAGATGATTGGTTTAGTTTGTGGAATGTCCAGTCTCGTGATAGATGTTCTAAATGCCAAGGCAGCTGGCTTGCCTCCAGAAGACAAGCCAAGATTATGTGACGATGCCTGTGAGAAAGAACTTGAAAATGTTCCTATGGTCACGACTGAGTCTGGTTTGCAGTACAAGGACATCAAAGTTGGTGGAGGCCCCAGTCCACCTGTTGGATTTCAGGTGGCGGCAAATTATGTTGCAATGGTTCCATCTGGACAAATTTTTGACAGTTCACTTGAGAAGAAGCAGCTTTACATTTTTCGCGTTGGATCTGGTCAAGTGATCAAAGGACTTGATGAAGGGATTTTAAGCATGAAAGTTGCTCCAGGAAGGCCAAGGGTAGCTCCAAGTAGCCCTGTGGTATTTGATGTCAGTCTGGAATACATACCAGGCCTTGAAGATGATGAAGAGGCAGTCGAGATGAAATCTACGCTAATGGGTCGTCTTCAACTCCATTTCCCTCAATTGGGTTTCCGCCAAAACCTCACAAATCCAACCCTCCATTGTTGTACGGCAGGTCCACCTCCAAATATCATCTGTGGCCTCCGAAAGGGTCAGAGGAAGCCCTTAGGTAAGTCAAGGGTGCCCTCCACTGAGTCTATTCAAGCAGTTCAATCGCTCAAGCTCGCTAAATCCGCCTCCAAAATGGAGGACGTAATCAATAGCAAGCTTAGCAGATTGCTGAAAGCAGACTTGTTTGATGCTCTGGCTGAATTACAGAGGCAAAATGAACTGGAACTATCGCTTCAGGTCTTCAAATTCATGCGGAATGAAGAGTGGTACGAGCCAGATTTAAACTTGTACCATGTGATGATTCAAATGATGGGGAAGAACAAAATGATTGAAATGGCTGAAGAGGTCTTCCATGAGTTAAAAAGGGATGGGTTAGAACCAGACACAAGAGCTTTTAATGAGATGATGGGAGCATATATGCAGGTAGACATGGTGGAAAGAGCTGTTGAGACATATGAATTAATGAAAGCATCAGGTTGTATTCCAGATAAACTGACTTTCAAGATTTTGATCAAGAATCTTGAGAGATTTAGGGAAGAGTTTGCTGCAGTGGTCAAGAAAGAATGTGCTGAGTTCTTGGATTCTCCTGAGAAGTTCCTCAGGGACGTTGAACAGAAACTGATGAAAGTTCAAATTCTTTAA 1464 44.06 SHMGMPTGQLFKPKVQDFVIRFPTVPTPCSQFSMASSASSMLLPLGSASGIHQRISSDKIRPLVVRCLNANINAKEWRMKEYGKELNLTRRREMIGLVCGMSSLVIDVLNAKAAGLPPEDKPRLCDDACEKELENVPMVTTESGLQYKDIKVGGGPSPPVGFQVAANYVAMVPSGQIFDSSLEKKQLYIFRVGSGQVIKGLDEGILSMKVAPGRPRVAPSSPVVFDVSLEYIPGLEDDEEAVEMKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPNIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEWYEPDLNLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYMQVDMVERAVETYELMKASGCIPDKLTFKILIKNLERFREEFAAVVKKECAEFLDSPEKFLRDVEQKLMKVQIL 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9808013 9813881 - Cp4.1LG03g13020.1 Cpe03g01199 466916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01199 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Cpe03g01199 487 TIGRFAM PPR: pentatricopeptide repeat domain 405 437 IPR002885 -
Cpe03g01199 487 TIGRFAM PPR: pentatricopeptide repeat domain 370 403 IPR002885 -
Cpe03g01199 487 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 161 210 IPR001179 GO:0003755
Cpe03g01199 487 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 38 240 - -
Cpe03g01199 487 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 161 210 IPR001179 GO:0003755
Cpe03g01199 487 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP16-3, CHLOROPLASTIC 38 240 - -
Cpe03g01199 487 Pfam PPR repeat 371 399 IPR002885 -
Cpe03g01199 487 SUPERFAMILY FKBP-like 129 230 - -
Cpe03g01199 487 Pfam PPR repeat family 401 448 IPR002885 -
Cpe03g01199 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Cpe03g01199 487 Gene3D Tetratricopeptide repeat domain 299 466 IPR011990 GO:0005515
Cpe03g01199 487 Gene3D - 121 232 IPR046357 GO:0003755
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01199 - - - csv:101222042 394.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01199 Cpe-Chr3:9808013 Cpe15g00655 Cpe-Chr15:7229662 5.66E-36 dispersed
Cpe03g01199 Cpe-Chr3:9808013 Cpe04g00885 Cpe-Chr4:8101987 1.63E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1287 . . Bda03g00972 . Bpe04g00898 . . . . . . Cma14g01427 . Car14g01257 Sed12g0549 . Cpe03g01199 Bhi01g03696 Tan10g1419 Cmetu07g0756 . . . . . . . . . . . . . . Cone11ag0649 . . . Cme07g01953 . . . . . . . . . . Cmo14g01463 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009069 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01199 Cpe_Chr03 FPKM 1994.450806 2213.828857 347.037872 352.371857 527.187195 514.238953 480.974243 115.780815 115.697777 110.373093