Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01210 ATGATGCACTTTACTGATTTTGGGTCTAATTCGCCACCCCCTCCACTCCATTACCAGCCGCCGCCGCCGCCGCACTCTCAGCTGTCACAGTCTCAGCCTTCCGACGAAATCAGAGTTACTAATCTCTATTCCCCAGAAACCCAGTGGTTCGCCATTGGTGCGATCGCGCCGCCGCCGCTCGTTTTCCAAATTCCCAAGCTTAAGAAGCTGATTGTCAGCTATTGTGACTGGGGAGGAAGCAGCAGGGGTATCAGGGCATTTATGGACTCAGAATTGCCAGCTTTTAGAGAGAAAAATCCTCAGCTACAAATAGTTACTGACCTCATTCGTGGGCAGCATCCACACTTAAAGGGCTTCTACAAAAGCAATAATCATCGGGTGATATGTGTGAACAACATGGATCCGGAAGACATACATTTACATGCAACGAGACTAAGGAATGCACTGGGACGAAAGGTCTTAAAACTGAGGACAAGACATGTAACCAAGAATCCTAGTGCGCAAGGTACTTGGAACACTGATTTAAGATTTTGA 534 47.57 MMHFTDFGSNSPPPPLHYQPPPPPHSQLSQSQPSDEIRVTNLYSPETQWFAIGAIAPPPLVFQIPKLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTDLIRGQHPHLKGFYKSNNHRVICVNNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTDLRF 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9884324 9888284 - Cp4.1LG03g13040.1 Cpe03g01210 466927

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01210 177 MobiDBLite consensus disorder prediction 1 35 - -
Cpe03g01210 177 PANTHER 39S RIBOSOMAL PROTEIN L43 65 174 IPR039927 GO:0003735|GO:0032543
Cpe03g01210 177 SMART L51_S25_CI_B8_2 76 149 IPR007741 -
Cpe03g01210 177 Pfam Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain 84 134 IPR007741 -
Cpe03g01210 177 MobiDBLite consensus disorder prediction 13 28 - -
Cpe03g01210 177 SUPERFAMILY Thioredoxin-like 67 148 IPR036249 -
Cpe03g01210 177 Gene3D Glutaredoxin 61 176 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01210 K17424 MRPL43; large subunit ribosomal protein L43 - csv:101218103 203.371
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01210 Cpe-Chr3:9884324 Cpe08g00060 Cpe-Chr8:405007 9.48E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1318 . . . . . Bpe14g00786 . . . . . . Car06g01426 . . . Cpe03g01210 . . . . . . . . . . . . . . Cone14ag0622 Cone15ag0630 . . . . . . . . . Bda13g00542 . . . . . Cmo06g01674 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006244 2 0 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 4 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01210 Cpe_Chr03 FPKM 4.635812 4.411533 2.315478 2.347485 26.134586 34.031139 27.074392 2.643862 1.536919 1.615893