Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01212 ATGGTTTGTTCTAAGTCCACGACTGGGGAGAGTGTCCCCTGTGATTTCTGTAACGAGCAGGTTGCGATTCTGTACTGTAGAGCCGACTCTGCGAAGCTTTGTTTGTTCTGTGATAAGCATGTTCACTCTGCGAACTTGCTTTCTCGGAAGCATGTTCGTTCTCAGATCTGTGATAACTGTAGGTCTGAGCCGGTTTCGATTCGCTGTTCGACGGATAATCTCGTGCTCTGTCAGGAGTGCGATTGGGACGCCCATGGGAGCTGTTCGGTCTCTGCTGCTCATGAACGAACTCCGATTGAAGGCTTCACTGGCTGCCCTTCGGCGCTTGAGCTTGTTTCGTTATGGGGCTTCGATCTTGGAGAAAAGAAGATGGAGGAATCCGAGATGTTGGTGCAAAATTGGGTGGGCTCGCAGGACTTGGTTATGCCGATTGATCATTGGGCGTGTAGAGCTAGTGCGACTGCTTTTAACGACCTCGTTGTTCCGAATGATAACCCTTATCTCTTCGCGAATCTCAACTGTACCGATGCTGCGTCGATGTTGAAGAGGCAAAATCCGAGCTGTGGAAAGCATAAGCAAGTGATTTACAAGCAATTGGTTGAGCTGCTTAAGAGGGATTTCGAAGGCGGCGACGATGGTGTTGATGAAACTCGCGATGGCGATGCAGGTGGTGAAGAGGTTGGATTACAGAATCTGGTTCCTGAAACAACGAATGGGGTTTGTTATTGGCAAGAGGATTTGGAAGCTCGTCAAGTTCATGAAGAGGATAATGGGGTTTTTGTTGATGCTGCAGCTCCTCCTCCTCAGCCATTACTGCAGCAACAAACTTCCTTCACGTCTCTGCTAACGATGCCGCCTCATGTGGGTCTGAAAGAGAGCGAGCGCATTGGTGATGAAACTAATGTTTGTGATGGTAACCCAACTCGTCAAAGCATTCAAATTTGGGACTTTAATTTAGGACGCTTAAGGGGACACAAAGATTCGAGTTCATTTGAAGACGCCTATGGCACTGGCAACATGGGATTTACCATTAAGAATTTTGATGATTTTTTTAAAGAAACATCCCCAACAAGCCCCAAGTTGCTAGGAGAAACCTATCAGATCAATTGCTCGAGCACACATGATGATATACCATCATTCAATGGTAATATCAACAACACAACGCTAAGTCAGGGGGCAGCAACATGCGAGAGCGGCAATCTGTCAAAGAGCAAGCTGAAATGTGGTTATAAAAATGCACAGCCAATCGAAAAACCCATTATTGTAAATGTCGACAGCATATTGTCGACATCGACAACCAAGGCCGATCTAGAGCTTCTTGCACAGAACAGAGGCAACGCAATGCAGCGTTACAAGGAGAAACGAAAAACTCGAAGGTACGATAAATACATTCGTTATGAGTCGAGGAAGGCGAGAGCGGATACGAGGAAGCGAGTGAAGGGTCGGTTTGTGAAGGCTAGTGAAGCCCCTGTTTTTTGA 1479 46.86 MVCSKSTTGESVPCDFCNEQVAILYCRADSAKLCLFCDKHVHSANLLSRKHVRSQICDNCRSEPVSIRCSTDNLVLCQECDWDAHGSCSVSAAHERTPIEGFTGCPSALELVSLWGFDLGEKKMEESEMLVQNWVGSQDLVMPIDHWACRASATAFNDLVVPNDNPYLFANLNCTDAASMLKRQNPSCGKHKQVIYKQLVELLKRDFEGGDDGVDETRDGDAGGEEVGLQNLVPETTNGVCYWQEDLEARQVHEEDNGVFVDAAAPPPQPLLQQQTSFTSLLTMPPHVGLKESERIGDETNVCDGNPTRQSIQIWDFNLGRLRGHKDSSSFEDAYGTGNMGFTIKNFDDFFKETSPTSPKLLGETYQINCSSTHDDIPSFNGNINNTTLSQGAATCESGNLSKSKLKCGYKNAQPIEKPIIVNVDSILSTSTTKADLELLAQNRGNAMQRYKEKRKTRRYDKYIRYESRKARADTRKRVKGRFVKASEAPVF 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9897821 9900787 + Cp4.1LG03g12900.1 Cpe03g01212 466929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01212 492 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Cpe03g01212 492 ProSiteProfiles CCT domain profile. 444 486 IPR010402 GO:0005515
Cpe03g01212 492 ProSiteProfiles Zinc finger B-box type profile. 9 56 IPR000315 GO:0008270
Cpe03g01212 492 Pfam B-box zinc finger 54 99 IPR000315 GO:0008270
Cpe03g01212 492 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 9 490 - -
Cpe03g01212 492 CDD Bbox1_BBX-like 13 56 - -
Cpe03g01212 492 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-RELATED 9 490 - -
Cpe03g01212 492 Pfam CCT motif 444 486 IPR010402 GO:0005515
Cpe03g01212 492 SMART bboxneu5 57 99 IPR000315 GO:0008270
Cpe03g01212 492 SMART bboxneu5 9 56 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01212 - - - csv:101217400 846.654
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01212 Cpe-Chr3:9897821 Cpe04g00659 Cpe-Chr4:6710458 1.41E-07 dispersed
Cpe15g00755 Cpe-Chr15:7810367 Cpe03g01212 Cpe-Chr3:9897821 2.31E-11 dispersed
Cpe09g00327 Cpe-Chr9:1964540 Cpe03g01212 Cpe-Chr3:9897821 7.13E-25 transposed
Cpe03g01212 Cpe-Chr3:9897821 Cpe08g00063 Cpe-Chr8:424354 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1326 . . . Bda11g00378 Bpe13g00823 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00287 . . Blo02g00202 . . Bda11g00378 Bpe14g00807 . . Bma06g01334 . . . . . . . . Cpe03g01212 . . . . . . . . . . . . . . . . Chy07g01493 Cme07g01930
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004278 2 0 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49241 PF00643 zf-B_box 2.60E-05 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01212 Cpe_Chr03 FPKM 19.326113 22.666336 28.850182 29.575693 22.432777 18.675602 24.92243 54.755699 58.535839 63.752716