Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01215 ATGGAAGCTGCTTACAGACAACCGAGCGAAGAAGCTATGGAGTCGAAGAGCACCGACTTCAACCATCTCACTGTTCTCCACAACGCTATGATTGTCACAATGGATCCCGACAGCCGTGTCTTCCGGAACGGCGGAATTGCGATCTCCGGCGACAAAATCAAAGCCATCGGTCACTCTTCCGAGATTCTCCTCCAATTCTCTGCTTCTGCCGACCACATTATTGACCTTCATTCTCAAATATTGCTTCCTGGGTTTATTAACACGCATGTCCACACTTCTCAGCAGCTCGCGAGAAGCATAGCCGACGATGTGGATTTGATGACTTGGTTGCACCATCGTATTTGGCCCTACGAATCCACCATGACTGAGGAAGATTCCTATGTTTCCTCTTTGCTTTGTGGTATAGAACTCATTCACTCGGGTGTGAGGGGACAACATGTATCTGGAATGGCCAAGGCCGTAGAGTTGTTGGGTCTGCGGGCGTGCTTAACTCAGTCAATAATGGATTGTGGGGAAGGATTGCCAGCTCCTTGGGCTGCTGTAACCACTGATGATTGCATTCAGTCTCAAAAGGAGCTTTACAAGAAGCACCACAACACAGCAGATGGGCGCATCAGAGTTTGGTTTGGTATCAGACAAATTATGAATGCAACAGAACGCCTATTGATCGAAACACGGGACAACGCAATAAAACTAGAAACAGGGATCCACATGCATGTTGCAGAGATACCCTATGAGAACCTCAAAGTGATGAACGAACGAAAAGTTGATCATGGAACCGTTACTTACCTGGATAAAATACGGTTCCTCGGAAACAATTTACTTTCTGCACATACTGTCTGGGTCAATGACAATGAGATTAGTTTTCTTTCAAGGAATGGGGTCAAAGTATCCCACTGTCCTGCTTCTGCAATGAGAATGCTTGGATTTGCACCTATTAGAGAGATGCTTGATGCTGGTATTTGTGTTTCCATTGGAACAGATGGAGCTCCGTCAAATAATAGAATGAGCATAGTTGATGAGATGTACCTTGCATCACTCATTAATAAAGGCCGGGAAGTGTTTGTAAATGGAACAACCAATCCCTCTGTTCTTCCTGCTGAAGTAGTTCTACAAATGGCGGATATGGTTGTGATCAATCCTTCCTCTTGGTCCATGGTTCCTGCCCATGACAGTATTTCATGCCTTGTCTACAGCATGAGGACTGAAAATGTTGTCTCTGTAATGTGCAATGGCCGGTGGATAATGAAAGACAAGAAGATCGTTAATGTAAACGAGGAAGATGTAATATTGATGGCAAAAAAGGCTTGTAAGGAACTGGTTGAGAGAGCAGGAATAAGAATTCCGAACAGAATGAACTTCATCTAA 1368 44.66 MEAAYRQPSEEAMESKSTDFNHLTVLHNAMIVTMDPDSRVFRNGGIAISGDKIKAIGHSSEILLQFSASADHIIDLHSQILLPGFINTHVHTSQQLARSIADDVDLMTWLHHRIWPYESTMTEEDSYVSSLLCGIELIHSGVRGQHVSGMAKAVELLGLRACLTQSIMDCGEGLPAPWAAVTTDDCIQSQKELYKKHHNTADGRIRVWFGIRQIMNATERLLIETRDNAIKLETGIHMHVAEIPYENLKVMNERKVDHGTVTYLDKIRFLGNNLLSAHTVWVNDNEISFLSRNGVKVSHCPASAMRMLGFAPIREMLDAGICVSIGTDGAPSNNRMSIVDEMYLASLINKGREVFVNGTTNPSVLPAEVVLQMADMVVINPSSWSMVPAHDSISCLVYSMRTENVVSVMCNGRWIMKDKKIVNVNEEDVILMAKKACKELVERAGIRIPNRMNFI 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9914438 9923323 + Cp4.1LG03g12930.1 Cpe03g01215 466932

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01215 455 Gene3D Urease, subunit C, domain 1 26 430 IPR011059 GO:0016810
Cpe03g01215 455 PANTHER AMINOHYDROLASE SSNA-RELATED 374 454 - -
Cpe03g01215 455 PANTHER AMINOHYDROLASE SSNA-RELATED 22 374 - -
Cpe03g01215 455 PANTHER AMINOHYDROLASE SSNA-RELATED 374 454 - -
Cpe03g01215 455 PANTHER AMINOHYDROLASE SSNA-RELATED 22 374 - -
Cpe03g01215 455 SUPERFAMILY Composite domain of metallo-dependent hydrolases 25 92 IPR011059 GO:0016810
Cpe03g01215 455 CDD ATZ_TRZ_like 24 422 - -
Cpe03g01215 455 Pfam Amidohydrolase family 80 351 IPR006680 GO:0016787
Cpe03g01215 455 SUPERFAMILY Metallo-dependent hydrolases 83 374 IPR032466 -
Cpe03g01215 455 Gene3D - 84 373 - -
Cpe03g01215 455 SUPERFAMILY Composite domain of metallo-dependent hydrolases 374 446 IPR011059 GO:0016810
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01215 - - - cmos:111457595 887.486
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1308 . . . Bda11g00382 Bpe13g00820 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00292 . . . . . Bda11g00382 . . . Bma06g01337 . . . . . . . . Cpe03g01215 . . . . . . . . . . . . . . . . Chy07g01487 Cme07g01925
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009548 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01215 Cpe_Chr03 FPKM 12.593518 16.362776 17.258198 17.653751 18.65 17.819185 20.555565 16.050705 15.06266 16.055752