Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01219 ATGGATTCCTGGGCTTCCATCCCTGTTCACGATGAGTACCAAAAGCTCGTCATTAGAATGAACCCCCCAAGGGTGTCTATTGATAATACCTCGAGCAGGAAGGCCACTTTGATTAAGGTTGATAGTTCTAATAGGCATGGCAGTTTGCTGGAGGTGGTTCAGGTTCTCACTGATTTGAATCTCATAATTCGTCGAGCTTACATTTCTTCTGATGGTGAATGGTTCATGGATGTTTTTCATGTCACTGATCAGCATGGGAAAAAGCTCTGTGATGATAGTGTGGGCGAGAGAATCCAACAGTCACTAGGGCCAAGGGCGCGTAGTTTCAGAACATTAAGGAGGTCGGTAGGTGTCCAAGCTGCTGCAGAACATACGACGATCGAATTGTCTGGACGAGACAGGCCAGGCTTGCTGTCTGAGGTTTTTGCTGTTCTTACAGATCTCAAATGTAATGTAGTAGCTGCTGAGGTATGGACCCACAATTCAAGAATGGCTTCGGTCGTTTACATCACTGATGACACGAGTGGAATGTCGATAGATGACCCCGATCGGTTGTCTAAGATTAAACAGCTTCTCCTCTATGTTCTTAAAGGAGATAGAGATAAGCATAGTGCCAATACTGCTGTTTCAATGAACTGTACTCATAAAGAGAGGAGGCTGCATCAAATGATGTATGCCGACCGTGACTTCGACTTGAATTATGCGAGTTGCGGCGAAAGCTATCAGAGCAGGCCGCTTGTGACAGTAGAGAACTGTGTTGAGAAGGGATATACCATTGTCAACCTGAGATGCCCCGACCGACCCAAGCTACTTTTCGATACCGTTTGCACCCTGACTGATATGCAATATGTCGTGTACCATGCAACCATCATTGCTGAAGAGCCCGAGGCTTATCAGGAGTACTTTATCAGGCATGTAGATGGAAGTCCTATTAGTTCAGAAGCAGAGAGGCAGAGGGTTATCCATTGCTTGGAGGCAGCAATTAAGCGACGAACGACCGAGGGTATAAAACTCGAGCTTTGTAGTGAAGACAGAGTCGGGCTTTTAAGCGACGTAACGAGAATATTTAGAGAGAACGGTCTTTCTGTCACTCGAGCTGAGGTTACCACGAGAGGAAGTCAGGCAGTGAATGTTTTCTACGTGACTGATGCATCAGGAAACTCAGTAAGGAGCGACACGATCAAGGCAGTACGAGAAGCCATTGGACTAACAATACTCCATGTGAAGGACGAGGAACGACAGTCGAAGTATCCAACGCAGGAGGGGTCGGGATTCTCATTGGGAAACCTGTTTCGGTCGAGATCGGAGAAGGTACTTTACAACTTGGGTTTGATAAAGTCATGTTCATGA 1350 46.37 MDSWASIPVHDEYQKLVIRMNPPRVSIDNTSSRKATLIKVDSSNRHGSLLEVVQVLTDLNLIIRRAYISSDGEWFMDVFHVTDQHGKKLCDDSVGERIQQSLGPRARSFRTLRRSVGVQAAAEHTTIELSGRDRPGLLSEVFAVLTDLKCNVVAAEVWTHNSRMASVVYITDDTSGMSIDDPDRLSKIKQLLLYVLKGDRDKHSANTAVSMNCTHKERRLHQMMYADRDFDLNYASCGESYQSRPLVTVENCVEKGYTIVNLRCPDRPKLLFDTVCTLTDMQYVVYHATIIAEEPEAYQEYFIRHVDGSPISSEAERQRVIHCLEAAIKRRTTEGIKLELCSEDRVGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVTDASGNSVRSDTIKAVREAIGLTILHVKDEERQSKYPTQEGSGFSLGNLFRSRSEKVLYNLGLIKSCS 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9932567 9935927 - Cp4.1LG03g12870.1 Cpe03g01219 466936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01219 449 ProSiteProfiles ACT domain profile. 337 413 IPR002912 -
Cpe03g01219 449 CDD ACT_ACR_4 335 406 - -
Cpe03g01219 449 ProSiteProfiles ACT domain profile. 126 203 IPR002912 -
Cpe03g01219 449 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 2 447 IPR040217 -
Cpe03g01219 449 SUPERFAMILY ACT-like 333 400 IPR045865 -
Cpe03g01219 449 PANTHER OS08G0515400 PROTEIN 2 447 - -
Cpe03g01219 449 SUPERFAMILY ACT-like 123 192 IPR045865 -
Cpe03g01219 449 Pfam ACT domain 125 177 IPR002912 -
Cpe03g01219 449 Pfam ACT domain 340 397 IPR002912 -
Cpe03g01219 449 Pfam ACT domain 37 85 IPR002912 -
Cpe03g01219 449 CDD ACT_ACR_3 257 331 - -
Cpe03g01219 449 Gene3D - 334 411 - -
Cpe03g01219 449 Gene3D - 120 193 - -
Cpe03g01219 449 ProSiteProfiles ACT domain profile. 37 117 IPR002912 -
Cpe03g01219 449 SUPERFAMILY ACT-like 33 104 IPR045865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01219 - - - csv:101215960 857.055
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01219 Cpe17g00924 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01219 Cpe-Chr3:9932567 Cpe17g00924 Cpe-Chr17:7144786 0 dispersed
Cpe03g01219 Cpe-Chr3:9932567 Cpe01g00982 Cpe-Chr1:5827855 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1301 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00179 Cam06g0032 Cec06g0198 Cco06g0193 Clacu06g0195 Cmu06g0189 Cre06g0961 . . . . . Csa04g00296 Chy11g01810 Cme11g02343 . Blo12g00284 . . . . . . Sed12g0612 . . . . . . Cpe17g00924 Cpe03g01219 Bhi12g02421 Tan06g1481 Cmetu07g0215 . . . . . . . . . . . Lsi09g01746 . Chy07g01484 Cme07g01921
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001695 2 3 2 3 2 2 3 2 2 2 2 2 3 3 2 3 2 2 3 2 1 2 2 2 2 2 2 6 3 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01219 Cpe_Chr03 FPKM 4.645069 5.830151 2.281236 1.929641 5.725694 6.406293 6.620413 5.426927 5.890751 5.026939