Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01223 ATGATGGAAAATTTCCCAAATTTTCTGACGACTCCATCTTCTTCAACCTCCCTCTCTCTGCAGCAAATGCTGATTTCTCGAGCTTCCGAGCTCGCCGGAATCCATGGAGGAGTCTCCGGCGGGGTTCCTCTGTTGTCGGATGGAGTAGATTTGTCGGAGAAGAAGGTGGGTGTGCCGGCGGCCGGACGGGGAGGTTATGAACAGAAAAAGAAGACGTTGAGCCGGAGATTCTGTTTTCAAACAAGAAGTCAAGTTGATATTCTTGATGATGGTTATAAATGGAGAAAGTATGGACAAAAGGCTGTGAAGAACAACAAATTCCCAAGAAGCTACTACAGATGTACACACCAAGGGTGCAAAGTGAAGAAGCAAGTGCAAAGGCTAACTAGAGATGAAGGGGTGGTGGTCACAACTTATGAAGGCATCCACTCTCATCCCATTCTCAAATCCGCTGATAACTTCGAGTATATTTTGAGTCGCATGCAAATTTACGCTTCTTATTGA 504 45.63 MMENFPNFLTTPSSSTSLSLQQMLISRASELAGIHGGVSGGVPLLSDGVDLSEKKVGVPAAGRGGYEQKKKTLSRRFCFQTRSQVDILDDGYKWRKYGQKAVKNNKFPRSYYRCTHQGCKVKKQVQRLTRDEGVVVTTYEGIHSHPILKSADNFEYILSRMQIYASY 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9956281 9957935 + Cp4.1LG03g12920.1 Cpe03g01223 466940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01223 167 SUPERFAMILY WRKY DNA-binding domain 80 147 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe03g01223 167 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 67 164 IPR044810 GO:0003700
Cpe03g01223 167 Gene3D WRKY domain 73 147 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe03g01223 167 ProSiteProfiles WRKY domain profile. 83 148 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe03g01223 167 SMART WRKY_cls 88 147 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe03g01223 167 PANTHER WRKY TRANSCRIPTION FACTOR 75-RELATED 67 164 - -
Cpe03g01223 167 Pfam WRKY DNA -binding domain 89 146 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00631 Cpe-Chr3:3760638 Cpe03g01223 Cpe-Chr3:9956281 3.18E-57 dispersed
Cpe03g01223 Cpe-Chr3:9956281 Cpe04g00481 Cpe-Chr4:5469872 1.87E-54 dispersed
Cpe03g01223 Cpe-Chr3:9956281 Cpe08g00072 Cpe-Chr8:462927 2.36E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49243 PF03106 WRKY 1.20E-25 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01223 - - cmo:103494564 219.55