Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01229 ATGGTGTTGGTTTTTAACAGGGAAGATGTAGAGCAAAAGATGACTGGGGAACTGGGAAGTGGCGGGAAGGTTCTTCTGAAGGTGAGGTTGGCTCACCAAGTTGAATTTGGGGAGTCTGTAGCAATTCTAGGGTCATCTGAAGAATTGGGCTCTTGGAAGAATTGTGTTCTTCTGAATTGGAGTGAGGATGGGTGGGTTTGCGATTTAGAGCTTAGAGGGGATGAGCAAGTCGAGTTCAAGTTCGTCATTGTGGGAAAGGATGGGAGTGTGTTGTGGGAATCTGGAGATAACCGGGTTCTCCATCTGCCTAAGATAGGGAAATTTAGCTCAGTTTATCAATGGAATCAAACTGGTGAGGCTGTTGAAATGTTGGCTTTGGATGTTGAAGAGGTTAGTGAAGAAGATGAAATATTGCCTTTGGACGTAGAGGAGGTTAGTGAAGGAGATAAAATGTTGGCTTTGGATGTAGAGGAGGTTAGTGAAGAAGATGAAATGTTGCCTTTGGATGTAGAGGAGGTTAGTGGAGGAGATAAGATGTTGGCTTTGAATGTAGAGGAGGTTAGTGAAGGAGATAAGATGTTGGCTTTGGATGTAGAGGAGGTTAGTGAAGGAGATAAAATGTTGGCTTTGGATGTACAGGAGGTTTGCGAAGGAGATAAAATGTTGGCTTTGGATGTAGAGGAGGTTAGTGAAGGAGATCAAATGTTGGCTTTGGATGTACAGGAGGTTAGCGAAGGAGATAAAATGTTGGCTTTGGGTGTCGAGGAGGTTAGTGAAGGAGATAAAATGTTGGCTTTGGGTGTCGAGGAGGTTAGTGGAGGAGATAAAATGTTGCCTTTGGGTGTCGAGGAGGTTAGCGAAGGAGATAAAGGGTTGCCTTTGGATGTAGAGGAGATTAGTGAAGGAGATAAAATGTTGCCTTTGGATGTAGTGAAGGTTAGTGAAGGAGATGAAATGTTGCCCCTGAAAGCAGAAGAGATTAATGGGGATGGAACGTCTCCTTTGGATGCAAAGGATTTCACTGAAGGAAATGAAACATCGCCTTCGGATGCAAAGGAGATTGCTGAAGGAGATACAACCTTGCCTTCAGATACAATGGAAATCGCTGAAGGAGATACAACCTTGCCTTCGGATGCAAAGGATATTAATGAAGGAGAAGAAACTTTGTCTTTTGATTCAAAGGGGATCGAAGAAGGAAATGAAACGTTGCCACTGGATGCAAAAGAGGTCAACAAAGGAGATGAAATGTTCCCTTTTAATGTGAAGGGGATCGACGAGGGAGATGAAAAGGACAGGGATGTTGAAGCTGGCAATGGGCCTTTGGTAGAAGATGAGGCCAGTCCTTTTGTTGGGCAGTGGAAAGGGAATCTGGTACACCCCAACCGGGAATCTGAGGGGATTTGGGACACTTCTGGTCTTGAGGGGTTAGCTCTACAGTTGGTAGAAGGAGAGAAAAATGCCAGGAATTGGTGGAGAAAGCTTGAAGTTGTGCGTGAATTATTAGTCGAAAATGTGCACGCTGAGGAGTGCCTGGAGTCATTGATATATTCTGCTATCTACCTTAAGTGGATAAATACAGGTCAAATCCCTTGTCTTGAAGATGGGGGTCATCACTGGCCAGATAGGCATGCTGAAACTTCTAGGATTATATTTCGCGAACTAGAACGATCGTTGTCCAAGAAAGATATTTCTCCCCAGGCATCTCTCGTAGTCCGAAAAATTCATCCATGTTTGCCGTCTATTAAATCAGAATTTACTGCATCTGTTCCTTTAACACGTATACGAGATATTGCTCATCAGAACGATATCCCTCATGATCTCAAGGAAGAAATCAAACATACAATACAAAACAAGCTTCATCGCAATGCTGGCCCAGAGGACTTACTTGCCACAGAAGCAATGCTTACAAGGATAACCAAAAACCCTGGAGAATATAGTGAAGTCTTTATAGAGCAGTTCAAAATATTCTACCAAGAATTGAAAGATTTCTTCAATGCTGGGAGCCTTGCAGAACAACTTGAATCAATCAAGGAGTCTGTTGATGGACATGGCTTGTCGGCTCTTGCCTACTTCTTGGAGTGCAAAAAGGAGAGATCCCTCGTTTTGGATCAAAGGGAGGTGGCGATGATGGGCGACATCGACAAGAACTTGGATGCTGCAGATGAGTTGGGCAGTTCTTTCCAAAACCAAGGCACTGCCCTGGTTTTCAAAACCATTCAATCATTGAATGCTTTGAGAGAAATACTCATAAGAGGTCTTGAAAGTGGCTTGAGAAATGATGCTTCTGATACAGCAATAGCCATGCGGCAAAAATGGCGTCTTTGTGAGATCGGGCTTGAGGACTATTTGTTTGTTCTTCTTAGCAGATTTATAAATGTGATGGAGGCAACAAGGGGTGGTGATATGCTGGTAGAAAATGTGAAGTCAAAGAATGTAAGCTATTGGAATGAACCACTGGATGCCATTATTTTTGGTACTCATCAGCTGGGCTTATCTGGTTGGAAGCCAGAAGAGTGCGTGGCTATCGTAAATGAGATTCGTGCTTGGAAGGAGAGAGGTCTCGCTGAAAGGGAAGGAAGTGAAGATGGCCCAACTATCTGGGGATTGAGGCTTAAGGCTACTCTTGATAGAACAAGGAGGCTGACTGAGGAATATTCTGAAGCGCTTCTTCAAATATTCCCTGAGAAAGTTAAGATGCTTGGAAAAGCGTTTGGGATCCCTGAAAACAGCGTGAGAACATATACTGAAGCTGAAATTCGTGCTAGCGTAATTTTTCAGGTATCGAAGCTATGCACGATTCTTTTGAAAGCAATCAGAACCGCACTTGGATTGCAGGGTTGGGATGTTCTTGTGCCAGGATCTGTTGAAGGAACATTTGTTCAGGTTGAGAGGATTGTCCCAGGGTCTCTTCCAACATCCATAGAAGGGCCTGTTATTCTTATGGTTAACAAAGCCGATGGCGATGAAGAGATAACAGCTGCTGGGAGCAACATAACAGGAGTTGTGCTACTACAGGAACTACCTCATTTATCTCATCTTGGTGTAAGGGCTCGACAAGAAAAAGTTGTATTTGTTACATGTGAGGACGACGAAAGAATTTCTGTTCTGCAGAAACTTCGCGGGAATTTTGTGAGGATGGAAGCATCGGCAACTTCTGTTCATATATATCCTCCATCAGATACAAGCACTGATAACTTTCCTGCCAGAACTGCTCCAGACGAGTATGTGTTTAGTTTTGAAAAGTCCAGTATGCAAGACCCCTTATTACCTGCCTCTGGAGCTCCTTACCCGACACTGGTGACGTATAATGCAGTCAAATCGTTCCTCAATGACGGAATTTCTTCTGGAGTGGTACAGCTTGCTGATGCAGATGCTCGAATTGCAGGAGCAAAAGCTGCCATTTGTGGTCGTTTGGCTTCTTTGGCTGCCATCTCTGATAAAGGTTTTACAAGTCTACAAATTCCAGCTGCGTTTCGAGTTCCTGCAGGTGCAGTGATTCCATTTGGTTCTATGGAATTAGCACTCACTCAAACTAATTCCATGGAAAAGTTCATATCTATTTTGGAACAAATCGAAACAGCAAAAGTAGGAGTGGAACTAGATGAACTTTGCAAACAACTCCATGACTTGGTGTCTTCTCTGCAATTGACACAAGACATAATTGATAGTTTAGGGACAATATTTCCTGAAGATGCACGCTTAATCGTCCGTTCGAGTGCGAATCTCGAGGATTTGGCTGGCATGTCAGCTGCTGGACTTTACGAGTCAATTCCAAATGTAAGTTTGAGAGATCCAACTGTTTTTAGAAACGCTGTAAGCGAAGTATGGGCGTCGTTGTACACTCGAAGAGCAGTTCTAAGCAGACGAGCTGCTGGAGTACCTCAGAAGGATGCTTTAATGGCAGTACTGGTACAAGAACTGCTTTCTCCTGAATTATCATTTGTTCTGCACACATACAGCCCAACCAACCAAAATGGCAAGTATGTTGAGGCTGAAATTGCCTGTGGACTTGGCGAAATTCTAGCGTCTGGCGCCCGTGGCACGCCGTGGCGACTTTCGTCCGGGAAGTTTGATGGTTTAGTACAAACACTGGCCTTTGCAAACTTCAGTGATGAACTAAGAGTTCTTGCTGATGGTCAAATGGCACGTTTTACTGTAGATTACAGCAAAAAGCCATTGTCTATCGACCCGAAATTTCGTAAGCAGCTAGGTCGACGTCTTTGCTCTGTTGGGTATTTCTTGGAATGCAAGTTTGCCTGCCCACAGGACGTCGAAGGCTGCGTCGTCGGGGATGACATTTATATTGTCCAAGCACGCCCGCAGCCATTGTAG 4332 44.11 MVLVFNREDVEQKMTGELGSGGKVLLKVRLAHQVEFGESVAILGSSEELGSWKNCVLLNWSEDGWVCDLELRGDEQVEFKFVIVGKDGSVLWESGDNRVLHLPKIGKFSSVYQWNQTGEAVEMLALDVEEVSEEDEILPLDVEEVSEGDKMLALDVEEVSEEDEMLPLDVEEVSGGDKMLALNVEEVSEGDKMLALDVEEVSEGDKMLALDVQEVCEGDKMLALDVEEVSEGDQMLALDVQEVSEGDKMLALGVEEVSEGDKMLALGVEEVSGGDKMLPLGVEEVSEGDKGLPLDVEEISEGDKMLPLDVVKVSEGDEMLPLKAEEINGDGTSPLDAKDFTEGNETSPSDAKEIAEGDTTLPSDTMEIAEGDTTLPSDAKDINEGEETLSFDSKGIEEGNETLPLDAKEVNKGDEMFPFNVKGIDEGDEKDRDVEAGNGPLVEDEASPFVGQWKGNLVHPNRESEGIWDTSGLEGLALQLVEGEKNARNWWRKLEVVRELLVENVHAEECLESLIYSAIYLKWINTGQIPCLEDGGHHWPDRHAETSRIIFRELERSLSKKDISPQASLVVRKIHPCLPSIKSEFTASVPLTRIRDIAHQNDIPHDLKEEIKHTIQNKLHRNAGPEDLLATEAMLTRITKNPGEYSEVFIEQFKIFYQELKDFFNAGSLAEQLESIKESVDGHGLSALAYFLECKKERSLVLDQREVAMMGDIDKNLDAADELGSSFQNQGTALVFKTIQSLNALREILIRGLESGLRNDASDTAIAMRQKWRLCEIGLEDYLFVLLSRFINVMEATRGGDMLVENVKSKNVSYWNEPLDAIIFGTHQLGLSGWKPEECVAIVNEIRAWKERGLAEREGSEDGPTIWGLRLKATLDRTRRLTEEYSEALLQIFPEKVKMLGKAFGIPENSVRTYTEAEIRASVIFQVSKLCTILLKAIRTALGLQGWDVLVPGSVEGTFVQVERIVPGSLPTSIEGPVILMVNKADGDEEITAAGSNITGVVLLQELPHLSHLGVRARQEKVVFVTCEDDERISVLQKLRGNFVRMEASATSVHIYPPSDTSTDNFPARTAPDEYVFSFEKSSMQDPLLPASGAPYPTLVTYNAVKSFLNDGISSGVVQLADADARIAGAKAAICGRLASLAAISDKGFTSLQIPAAFRVPAGAVIPFGSMELALTQTNSMEKFISILEQIETAKVGVELDELCKQLHDLVSSLQLTQDIIDSLGTIFPEDARLIVRSSANLEDLAGMSAAGLYESIPNVSLRDPTVFRNAVSEVWASLYTRRAVLSRRAAGVPQKDALMAVLVQELLSPELSFVLHTYSPTNQNGKYVEAEIACGLGEILASGARGTPWRLSSGKFDGLVQTLAFANFSDELRVLADGQMARFTVDYSKKPLSIDPKFRKQLGRRLCSVGYFLECKFACPQDVEGCVVGDDIYIVQARPQPL 1443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9972981 9986031 + Cp4.1LG03g12950.1 Cpe03g01229 466946

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01229 1443 PANTHER PHOSPHOGLUCAN, WATER DIKINASE, CHLOROPLASTIC 7 175 - -
Cpe03g01229 1443 PANTHER PHOSPHOGLUCAN, WATER DIKINASE, CHLOROPLASTIC 400 1442 - -
Cpe03g01229 1443 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 16 116 IPR002044 GO:2001070
Cpe03g01229 1443 Gene3D - 1114 1307 IPR013815 GO:0005524
Cpe03g01229 1443 Gene3D Immunoglobulins 21 115 IPR013783 -
Cpe03g01229 1443 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 1123 1441 - -
Cpe03g01229 1443 SUPERFAMILY Starch-binding domain-like 22 115 IPR013784 GO:0030246
Cpe03g01229 1443 Pfam Starch binding domain 26 106 IPR002044 GO:2001070
Cpe03g01229 1443 MobiDBLite consensus disorder prediction 326 364 - -
Cpe03g01229 1443 Gene3D - 1309 1441 - -
Cpe03g01229 1443 Pfam Pyruvate phosphate dikinase, AMP/ATP-binding domain 1136 1441 IPR002192 GO:0005524|GO:0016301|GO:0016310
Cpe03g01229 1443 SMART CBM_20_2 21 112 IPR002044 GO:2001070
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01229 K15535 PWD; phosphoglucan, water dikinase [EC:2.7.9.5] - csv:101214042 1711.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01229 Cpe09g00597 CCT
Cpe01g01623 Cpe03g01229 CCT
Cpe03g01229 Cpe09g00597 ECH
Cpe01g01623 Cpe03g01229 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01229 Cpe-Chr3:9972981 Cpe09g00517 Cpe-Chr9:3449050 5.49E-35 dispersed
Cpe03g00059 Cpe-Chr3:314067 Cpe03g01229 Cpe-Chr3:9972981 3.96E-08 transposed
Cpe03g01229 Cpe-Chr3:9972981 Cpe08g00075 Cpe-Chr8:477421 1.13E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1258 . . . . . Bpe10g00763 . Bma15g00259 Cmo04g01939 . . Cma18g00688 . Car18g00638 . Cpe09g00597 Cpe01g01623 . . . . . . . . . . . . . . . . . . . . . . Blo06g00809 . . . . . . . . . . Cma04g01843 . Car04g01848 . . Cpe03g01229 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004547 2 0 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 1 3 3 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01229 Cpe_Chr03 FPKM 19.453493 21.281725 9.444564 10.310171 5.07129 4.556488 4.835521 11.669874 10.654704 10.485428