Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01232 ATGGGGAGTGATTTGTTTAGCGAATCTGAAGCGTGGGTTTCTTCTGTGAACGGAATTCGAGAGGAACCAGATGATGAAATCTCCATTGAAGTAGAGGAAGGAGTTGTGTCGGATTCGGATTTGGATGAGTCGGATCAAATGGGAGTGAAGAAGAAGATGAAGAAGATGAAGAAGAGGAATCAGGTTTTGCTTGAGGGATTTGTGGAGGATGAGGATGATTTGATGAGGACGAAGAGCTTAACGGATGAGGATCTTGATGAGCTTAAGGGATGTGTGGATCTAGGGTTTGGCTTTAGCTACGATGAGATTCCGGAGCTCTGCAACACTCTGCCGGCGTTGGAGCTCTGTTATTCTATGAGTCAAAAGTACATGGACGATCACCAGAAATCGCCGGTGAGCTCACCGGCCTCGGCGGCACCGGTGGATTCGTGTTCTTCTGTGTCGAGTCCGATTGCGAATTGGAAGATCTCCAGTCCTGGTGATCATCCTGAAGATGTTAAGGCAAGGCTCAAATTTTGGGCTCAAGCAGTGGCATGTACTGTTAGATTATGCAACTAA 558 47.13 MGSDLFSESEAWVSSVNGIREEPDDEISIEVEEGVVSDSDLDESDQMGVKKKMKKMKKRNQVLLEGFVEDEDDLMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNTLPALELCYSMSQKYMDDHQKSPVSSPASAAPVDSCSSVSSPIANWKISSPGDHPEDVKARLKFWAQAVACTVRLCN 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10005960 10007465 + Cp4.1LG03g12710.1 Cpe03g01232 466949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01232 185 MobiDBLite consensus disorder prediction 25 40 - -
Cpe03g01232 185 PANTHER EXPRESSED PROTEIN 17 185 - -
Cpe03g01232 185 PANTHER OSJNBA0071G03.3 PROTEIN 17 185 - -
Cpe03g01232 185 MobiDBLite consensus disorder prediction 1 53 - -
Cpe03g01232 185 Pfam Protein of unknown function (DUF1685) 80 136 IPR012881 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01232 - - - csv:101213317 292.737
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01232 Cpe17g00989 CCT
Cpe03g01232 Cpe08g00077 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01232 Cpe-Chr3:10005960 Cpe17g00989 Cpe-Chr17:7509464 3.07E-68 dispersed
Cpe03g01232 Cpe-Chr3:10005960 Cpe08g00077 Cpe-Chr8:496056 5.06E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1193 . . . . . . . . . . Cma06g01664 . Car06g01406 Car14g01297 . Cpe08g00077 Cpe03g01232 . . . . . . . . . . . . . . Cone14ag0576 . . Cone11ag0614 . . . Cme07g01904 . Blo07g00090 . . . . . Bma06g01421 . Cmo06g01658 . . . Car08g00063 . . Cpe17g00989 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001176 2 2 2 2 2 2 5 2 2 2 1 2 3 2 2 4 2 3 4 2 2 2 2 2 2 2 2 8 6 1 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01232 Cpe_Chr03 FPKM 24.612543 27.359127 31.507751 32.981865 21.2855 20.485106 23.203777 56.828388 53.163864 62.381775