Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cpe03g01233	ATGGATGAGGTTTGCGAGGGTAAGGACTTTTCGTTCCCTAAGCACGAGGAGGTGGTGCTTGAGTATTGGTCTGATATCAGGGCATTTGAGACCCAGCTTGAGCGCACAAAGGACCTTCCTGAGTATATTTTTTATGATGGCCCTCCGTTCGCCACTGGTCTTCCACATTATGGTCACATCTTGGCGGGAACCATCAAGGACATTGTCACCCGGTATCAGGTTATGACCGGTCATCACGTGACTCGTCGCTTTGGATGGGACTGCCATGGATTGCCTGTTGAGAATGAGATTGATCAGAAGCTAGGGATCAAGAGGAGAGACGATGTGTTGAAGATGGGGATTGACAAGTACAATGAAGAATGCAGAAGTATAGTCACGAGATATGTGGGGGAGTGGGAAAAAATCATCACGCGTACTGGTCGATGGATTGACTTTAAAAATGACTATAAGACTATGGACTTGAAATTCATGGAGAGTGTATGGTGGGTTTTTTCTCAGCTCTTCGAGAAAGGTCTTGTCTATAAAGGTTTCAAGGTCATGCCATATAGTACTGGTTGCAAGACGCCACTTTCAAACTTCGAAGCTGGTCAAAGCTATAAGGATGTCCCTGATCCTGAAATAATGGTAACTTTTCCAGTACTCGGGGATCCTCATAATGCAGCTTTTGTGGCTTGGACAACAACTCCATGGACCCTTCCGAGTAATCTTGCCCTTTGTGTTAATGCAAATTTCGTCTATGTGAAGGTTCGCAACAAGGCATCTGGAAAAGTTTATGTGGTTGCTAAATCCCGATTGTCAGCTCTACCTGTTGAGAAACAAAAAGTGAATGCACCAAATGGTTCTACCGATGTTGTTAACAAGTCAAATCCTAAGAAAAAAGGTTCCTCAAATTCAAAAACAGAGAGCTCAGTGGAGGACTCATATGAGGTATTGGAGGAAGTATTGGGAGCTTCTCTTGTGGGTAAAAAGTACGAGCCACTGTTTGATTACTTTAAAGAGTTCTCTGATGTGGCATTTAGAGTTGTTGCAGATAATTATGTAACTGATGATAGTGGTACGGGTATTGTCCATTGTGCTCCTGCATTCGGTGAAGACGACTATCGTGTTTGCATTGAGAACCAAGTGATCAATAAGGGTGAGAATCTGATTGTTGCAGTCGATGACGATGGTTGCTTTACAACAAAGATTACTCAATTTTCTGGGCGTTATGTCAAGGATGCAGACAAGGATATAATTGAGGCCGTGAAGGAGAAAAGGTTCCATAATTGGCTAGAGAATGCGAGAGATTGGGCTGTCAGCCGTAGTAGATTTTGGGGAACTCCTCTCCCTGTCTGGGTTAGCGAGGATGGAGAGGAAATACTGGTCATGGATTCAATTGAGAAACTTGAACAGCTTTCTGGTGTCAAGGTGTTTGATCTGCATCGGCACAAGATTGATCACATTACTATTCCATCTAGAAGAGGTCCTGAATATGGTGTGCTTCGGAGGGTAGATGACGTGTTTGATTGCTGGTTCGAGAGTGGGTCTATGCCATACGCATATATTCATTATCCATTTGAAAACGTTGAGCTTTTTGAGAAAAACTTTCCTGGGCACTTTGTGGCAGAAGGGCTTGATCAAACTCGTGGATGGTTCTATACTCTCATGGTTCTATCTACTGCTTTATTTGGGAAGCCCGCATTTCGGAACCTTATTTGTAATGGTCTTGTCCTTGCTGAGGATGGAAAGAAGATGAGCAAAAGGTTGAAAAATTATCCTTCACCAATGGAAATCATCAATGATTATGGAGCTGATGCTCTGAGATTATATCTTATAAATTCTCCAGTTGTACGTGCAGAGACTTTACGCTTCAAGAAGGAGGGCGTTTTTGGTGTTGTCAGGGATGTTTTCCTGCCATGGTATAATGCCTATAGATTTCTTGTTCAGAATGCTAAGAGGCTCGAAATTGAGGGATTTGCACCATTTTCTCCCGTAGATCAAGCTACCCTTCAAAAGTCGTTCAATGTGCTTGACCAATGGATAAACTCTGCCACCCAGAGTTTAGTATATTTTGTCAGAAAAGAAATGGATGGGTACCGACTCTACACGGTAGTTCCATATCTTCTAAAGTTTCTTGACAATCTTACAAATATTTATGTGAGGTTCAACCGCAAGAGACTAAAGGGCCGTACTGGGGAAGAAGACTGCAGGATAGCACTCTCTACTCTGTACCATGTCCTTTTAACATCTTGTATGGTCATGGCTCCATTTACACCATTTTTCACTGAAGCTTTGTATCAAAACTTACGGAAGGTTTCTGATGGGTCAGAGGAAAGCATTCATTACTGTTCTTATCCTCAGGAAGGAGGAAAGAGAGGTGAAAGAATTGAAGAAAGTGTTACAAGGATGATGACAATTATTGATCTTGCTCGCAACATTCGGGAGCGTCATAACAAACCTCTTAAAACACCTTTGAGAGAAATGATAGTGGTTCATCCCGACAAAGATTTTCTTGATGACATAGCCGGAAAGCTAAGAGAGTACGTTCTCGAGGAATTAAATATAAGATCTCTTATCCCATGCAATGATACGTTGAAGTATGCATCTCTTCGTGCTGAGCCAGATTTCAGTGTGTTGGGAAAGCGTCTTGGAAAAGCTATGGGAGTCGTGGCAAAGGAAGTCAAAGCAATGTCACAGGAAGATATCTTGGCTTTTGAGAAAGTGGGAGAAGTTACTATTGCTACTCATTGTTTAAGGTTATCTGACATAAAGGTTGTTCGTGATTTCAATCGACCTGATGGTATGACAGACAAGGAAATGGACGCTGCTGGGGATGGTGATGTACTAGTGATTTTGGATTTACGTCCCGATGAATCTCTATTTGAGGCTGGTGTTGCTCGTGAGATTGTTAATAGAATCCAGAAGTTGAGAAAGAAAGCTGCCCTTGAACCTACCGACTCCGTAGAGGTGTATTTTCGATCACAAGATGAGGATGCATCAGTTGCGCAAAGAGTTTTAAATGCACAGGAACTATACATAAGCGAGGCAATCGGTTCACCCCTGCTTCCGGCTGCGTTGTTGCCTTCACATGCAATGAGGGTTGATTACATTGATGGCCAGCCGGGTGTGGAAGTGGCACTGGGAGAGCATGTTTTCTTGACCGCCGGCGACAAGTTTCTGAAGGCCAAGTCTTCATGA	3177	43.03	MDEVCEGKDFSFPKHEEVVLEYWSDIRAFETQLERTKDLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQVMTGHHVTRRFGWDCHGLPVENEIDQKLGIKRRDDVLKMGIDKYNEECRSIVTRYVGEWEKIITRTGRWIDFKNDYKTMDLKFMESVWWVFSQLFEKGLVYKGFKVMPYSTGCKTPLSNFEAGQSYKDVPDPEIMVTFPVLGDPHNAAFVAWTTTPWTLPSNLALCVNANFVYVKVRNKASGKVYVVAKSRLSALPVEKQKVNAPNGSTDVVNKSNPKKKGSSNSKTESSVEDSYEVLEEVLGASLVGKKYEPLFDYFKEFSDVAFRVVADNYVTDDSGTGIVHCAPAFGEDDYRVCIENQVINKGENLIVAVDDDGCFTTKITQFSGRYVKDADKDIIEAVKEKRFHNWLENARDWAVSRSRFWGTPLPVWVSEDGEEILVMDSIEKLEQLSGVKVFDLHRHKIDHITIPSRRGPEYGVLRRVDDVFDCWFESGSMPYAYIHYPFENVELFEKNFPGHFVAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKRLKNYPSPMEIINDYGADALRLYLINSPVVRAETLRFKKEGVFGVVRDVFLPWYNAYRFLVQNAKRLEIEGFAPFSPVDQATLQKSFNVLDQWINSATQSLVYFVRKEMDGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRTGEEDCRIALSTLYHVLLTSCMVMAPFTPFFTEALYQNLRKVSDGSEESIHYCSYPQEGGKRGERIEESVTRMMTIIDLARNIRERHNKPLKTPLREMIVVHPDKDFLDDIAGKLREYVLEELNIRSLIPCNDTLKYASLRAEPDFSVLGKRLGKAMGVVAKEVKAMSQEDILAFEKVGEVTIATHCLRLSDIKVVRDFNRPDGMTDKEMDAAGDGDVLVILDLRPDESLFEAGVAREIVNRIQKLRKKAALEPTDSVEVYFRSQDEDASVAQRVLNAQELYISEAIGSPLLPAALLPSHAMRVDYIDGQPGVEVALGEHVFLTAGDKFLKAKSS	1058

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
3	10009373	10029081	+	Cp4.1LG03g12740.1	Cpe03g01233	466950

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cpe03g01233	1058	ProSitePatterns	Aminoacyl-transfer RNA synthetases class-I signature.	49	60	IPR001412	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Cpe03g01233	1058	SUPERFAMILY	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	632	881	IPR009080	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Cpe03g01233	1058	CDD	IleRS_core	40	617	-	-
Cpe03g01233	1058	PANTHER	SOLEUCYL-TRNA SYNTHETASE	414	1026	IPR023586	GO:0004822
Cpe03g01233	1058	SUPERFAMILY	Nucleotidylyl transferase	10	627	-	-
Cpe03g01233	1058	Pfam	tRNA synthetases class I (I, L, M and V)	416	615	IPR002300	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Cpe03g01233	1058	Pfam	tRNA synthetases class I (I, L, M and V)	19	270	IPR002300	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Cpe03g01233	1058	SUPERFAMILY	ValRS/IleRS/LeuRS editing domain	201	425	IPR009008	GO:0002161\|GO:0006418
Cpe03g01233	1058	PRINTS	Isoleucyl-tRNA synthetase signature	42	53	IPR002301	GO:0000166\|GO:0004822\|GO:0005524\|GO:0006428
Cpe03g01233	1058	PRINTS	Isoleucyl-tRNA synthetase signature	536	545	IPR002301	GO:0000166\|GO:0004822\|GO:0005524\|GO:0006428
Cpe03g01233	1058	PRINTS	Isoleucyl-tRNA synthetase signature	223	246	IPR002301	GO:0000166\|GO:0004822\|GO:0005524\|GO:0006428
Cpe03g01233	1058	PRINTS	Isoleucyl-tRNA synthetase signature	496	509	IPR002301	GO:0000166\|GO:0004822\|GO:0005524\|GO:0006428
Cpe03g01233	1058	PANTHER	SOLEUCYL-TRNA SYNTHETASE	1	418	IPR023586	GO:0004822
Cpe03g01233	1058	PANTHER	BNAUNNG00270D PROTEIN	1	418	-	-
Cpe03g01233	1058	Gene3D	-	619	811	-	-
Cpe03g01233	1058	PANTHER	BNAUNNG00270D PROTEIN	414	1026	-	-
Cpe03g01233	1058	CDD	Anticodon_Ia_Ile_ABEc	617	804	IPR033709	GO:0000049
Cpe03g01233	1058	Gene3D	HUPs	4	210	IPR014729	-
Cpe03g01233	1058	Gene3D	HUPs	351	615	IPR014729	-
Cpe03g01233	1058	Pfam	Anticodon-binding domain of tRNA ligase	671	821	IPR013155	GO:0004812\|GO:0006418
Cpe03g01233	1058	MobiDBLite	consensus disorder prediction	276	304	-	-
Cpe03g01233	1058	Pfam	Domain of unknown function (DUF5915)	840	1001	-	-

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cpe03g01233	K01870	IARS, ileS; isoleucyl-tRNA synthetase [EC:6.1.1.5]	-	csv:101212830	1937.15

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cpe03g01233	Cpe-Chr3:10009373	Cpe07g00485	Cpe-Chr7:3141685	7.20E-11	dispersed

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi5g1190	.	.	.	.	.	.	.	.	.	.	.	Cma14g01465	.	Car14g01301	.	.	Cpe03g01233	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Cme07g01901	.	Blo07g00070	Bda11g00442	.	.	Bpe13g00734	.	Bma06g01423	Sed09g0135	.	Cmo14g01504	.	.	.	.	.	.	Bhi12g02569	Tan06g2212	Cmetu10g0535	Lac12g1942	Hepe03g0423	.	Lcy13g0545	.	.	.	.	.	.	.	.	.	.	.

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0007512	1	3	1	1	1	1	2	1	1	1	1	1	2	1	1	2	1	1	2	1	1	1	1	1	2	1	1	0	1	1	36

Transcriptome

Select	Gene	Chr	Type	da1	da2	da3	da4	da5	da6	da7	da8	da9	da10
	Cpe03g01233	Cpe_Chr03	FPKM	0.103343	0.152049	0.0	0.0	1.19194	1.414053	1.246952	0.0	0.0	0.0