Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01238 ATGTTTCTTGCTTGTCCTATTCGGAACTCGGCGCTTTCGATTACATTTGCGCGAAGAATTACATGCACTGGCATGTCGAAACGAAGTTCATCTTCCATGCCAATAGCCTCAAACGAACCCCCTCCAGGAATTTCAGGTGTTCAATCTTCCAATGGCGTTTCTAAGTCTGAAACTCGTGTATTCGTGAGGAGAACAGTGAAAAAGAAGGCAGAAGGTCAAGATAGTGGGCTTGACCTAGAACTTAAAGACGATGTTAAACGTTGTTGTCCTCCTGATATTGAAGATTTTGCATTCAAAAGAACAAAGGATTCCCCCGGATCAAGGAAGTCTAAGCCTCCTCTAGATACCCTTCTCACCAGAATTGAAGATTCTAATCCAACCAGACAAAAAGGCGTTGCAGAAGGAGGTAAAACCCCTGTGAATTGGGAAAAGGTCCTTGAAGGAATTCAGGAAATGAGATCGGCTGAAGTAGCTCCAGTAGATACCATGGGATGCGGGCGAGCTGGAAAGAAGATTTGCTGTCTTGGCATCTTCTCTTCTCTCAAGCCAAACCAAAGACCACGTAACTCATGGCAAGCTCTTGGGCAGAGTGCAGGAGCAGCATTGCGTCTCCAAGAAAGTGGTCTTCTTACAGCTGATACCATGGACAAAGCTGATGAATCAACCATTAAAAGCTTGATTTACCCTGTTGGATTTTATTCTACAAAGGCTAAAAATTTGAAGAAGATTGCAAAAATATGTCTTATGAAGTATGGTGGGGACATACCTAGATCATTGGAGGAGCTACTTCTACTGCCTGGGATAGGCCCTAAGATTGCACATTTGATCATGATTATGGCGTGGAACGATGTTCAGGGGATATGCGTCGATACTCATGTTCATCGCATTTGCAATCGGCTTGGATGGGTGTCTGGGAAAGGCTCGAAACAGAAAACTTCCTCCCCTGAAGAAACTCGAGTGGCATTAGAACTATGGCTGCCAAAGGAAGAATGGGTTCCAATTAATCCTCTTCTGGTCCAAATATTTTCCCTCGAATGCTAA 1041 44.09 MFLACPIRNSALSITFARRITCTGMSKRSSSSMPIASNEPPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQDSGLDLELKDDVKRCCPPDIEDFAFKRTKDSPGSRKSKPPLDTLLTRIEDSNPTRQKGVAEGGKTPVNWEKVLEGIQEMRSAEVAPVDTMGCGRAGKKICCLGIFSSLKPNQRPRNSWQALGQSAGAALRLQESGLLTADTMDKADESTIKSLIYPVGFYSTKAKNLKKIAKICLMKYGGDIPRSLEELLLLPGIGPKIAHLIMIMAWNDVQGICVDTHVHRICNRLGWVSGKGSKQKTSSPEETRVALELWLPKEEWVPINPLLVQIFSLEC 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10045240 10050112 + Cp4.1LG03g12780.1 Cpe03g01238 466955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01238 346 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 199 339 - -
Cpe03g01238 346 Gene3D - 279 346 IPR023170 -
Cpe03g01238 346 SMART endo3end 193 344 IPR003265 GO:0006284
Cpe03g01238 346 MobiDBLite consensus disorder prediction 26 58 - -
Cpe03g01238 346 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 66 169 - -
Cpe03g01238 346 Gene3D Hypothetical protein; domain 2 188 278 - -
Cpe03g01238 346 CDD ENDO3c 197 341 IPR003265 GO:0006284
Cpe03g01238 346 ProSitePatterns Endonuclease III family signature. 253 282 IPR004036 -
Cpe03g01238 346 Pfam Helix-hairpin-helix motif 250 277 IPR000445 GO:0003677
Cpe03g01238 346 MobiDBLite consensus disorder prediction 97 117 - -
Cpe03g01238 346 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 199 339 - -
Cpe03g01238 346 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 66 169 - -
Cpe03g01238 346 SUPERFAMILY DNA-glycosylase 201 340 IPR011257 GO:0003824|GO:0006281
Cpe03g01238 346 Pfam HhH-GPD superfamily base excision DNA repair protein 208 312 IPR003265 GO:0006284
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01238 K10773 NTH; endonuclease III [EC:4.2.99.18] - csv:101212347 512.301
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1201 . . . . . . . . . . . Cma14g01469 . Car14g01306 . . Cpe03g01238 Bhi01g02693 . . . Hepe05g1227 . Lcy11g1140 . . . . . . . . . . Cone11ag0617 . . . Cme07g01894 . . Bda11g00458 . . . . Bma06g01418 . . Cmo14g01508 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010237 1 4 0 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01238 Cpe_Chr03 FPKM 5.817505 4.401539 13.056385 11.908588 5.050565 6.087226 4.231386 16.124138 17.440647 18.134897