Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01240 ATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGTGAGCTTGTTTTCAAGGAAGATGGTCAGGAGTATGCTCAGGTTCTCAGAATGTTAGGGAATGGTCGGTGTGAGGCGATGTGCATCGATGGAACAAAGCGTCTTTGCCATATCCGAGGGAAGATGCACAAAAAGGTTTGGATCGCAGCTGGTGATATAATACTTGTGGGTCTTCGCGACTATCAGGATGACAAAGCTGATGTCATCCTCAAGTATATGCCCGACGAAGCAAGGCTTTTGAAGGCATATGGTGAACTTCCTGAGAGCACACGTCTCAACGAGGGTATTGCTGGTGGTATCGATGATGAGGATGATGGTGGGGCCGATGACTATCTCGAGTTCGAGGACGAAGATATCGATAAGATATAG 438 47.49 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10063914 10064351 + Cp4.1LG03g12770.1 Cpe03g01240 466957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01240 145 SUPERFAMILY Nucleic acid-binding proteins 2 144 IPR012340 -
Cpe03g01240 145 Gene3D - 2 145 IPR012340 -
Cpe03g01240 145 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743|GO:0006413
Cpe03g01240 145 MobiDBLite consensus disorder prediction 1 25 - -
Cpe03g01240 145 CDD S1_IF1A 33 109 IPR001253 GO:0003743|GO:0006413
Cpe03g01240 145 TIGRFAM eIF-1A: translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743|GO:0006413
Cpe03g01240 145 PANTHER EIF-1A 1 145 IPR001253 GO:0003743|GO:0006413
Cpe03g01240 145 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723|GO:0003743|GO:0006413
Cpe03g01240 145 SMART eIF1neu4 28 110 IPR001253 GO:0003743|GO:0006413
Cpe03g01240 145 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743|GO:0006413
Cpe03g01240 145 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723|GO:0003743|GO:0006413
Cpe03g01240 145 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE 1 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01240 Cpe-Chr3:10063914 Cpe16g00399 Cpe-Chr16:5528162 5.41E-101 dispersed
Cpe03g01240 Cpe-Chr3:10063914 Cpe08g00083 Cpe-Chr8:530343 1.89E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01240 K03236 - ini:109155805 265.388