Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01247 GTTTCTGAGCTTTCCATTGATGGATTCGGGCTATCAGGGAGAATCGGACGAGGGTTTGAGAAATTGCAGCATCTCAAGGTACTCTCGCTTTCTGGCAATAATTTCACCGGCAATCTTAGTCCTGAGCTTGTTCTTCCTCCCAGTCTTCAGAGAGTTAATTTCAGTCGTAATCGTTTATCTGGACGGATACCTACTTCTTTAATCGCTATGTCCTCCATTAGATTTCTTGATTTTTCTGATAATCTGTTCTCTGGGCCGATTCCTGATGAAATGTTTGCTAACTGTTCTTTGCTTCATTATCTTTCTCTTGCGTCTAATATGCTTCAAGGCCCTGTCCCCAACACATTGCACACAAGGTGTTTGTATTTAAACACTCTGAATCTTTCGGCCAATCAGTTCTCTGGTAGCTTGGATTTATGGTCTTTGACAAGGCTCAGGACATTGGATCTTTCCAAAAATGCTTTCTCTGGGTATTTACCGCAAGGGATTTCAGCCCTCCATAACTTGAAAGAGCTCAGGTTACAGAGCAATCAGTTCTCAGGGCCATTGCCTGCAGACTTGGGATTATGTCTCCACTTGTCTACATTGGATGTCAGCAGGAACCGCCTCACCGGGCCGTTACCGGAGTCGATGAGGCTCTTAACCTCCTTGACCTTCTTGAACATTGGGTTCAACACGTTTTCAGGGGAGCTCCCGCAGTGGATTGGGAACATGACAAGCTTGAACTACGTGGAATTTTCAAGCAATGGCTTCACTGGCAGCCTTCCCTTGGCAATGGGAGGATTGAGATCTGTCAAATACATGAGTTTTTCAAACAACAAGCTATCTGGGAACATCCCGGAGACCTTAATGAAGTGTTCTGAGCTATCTGTGATCAAGCTAGAAGGAAACAGCTTGAATGGAAGGGTACCAGAGGGGCTGTTTGAACTGGGTTTGGAGGAGATCGATTTGTCTCAGAACGAGCTGATTGGTTCAGTCCCAGTTGGATCAAGCAAGCTTTTGGGGATTCTTCAGCTCGATGGCAACTCTTTGATTGGTCCAATTCCCGACGAGATTGGAAATTGTGTCTCACTATACTTGCTGCTTCCTGTTGGTGGCATCTTTCCAAGCTTGGATCAAAGTGCTCTGCAAGGGAACTTGGGCCTTTGCTCCCCTTTGCTTAAAGGACCTTGCAAAATGAATGTCCCTAAGCCCCTTGTTCTAGACCCCAACGCCTATCCCAGCCAAATGGGTGGCCAAACCAGCAGGGACAAGCCCTCACAGTACTCTAATTCTTCTCCCCATCATGTGTTCTTCAGTGTCTCTGCCATTGTTGCCATTTCTGCTGCCACTTTCATTGCCCTTGGGGTGCTTGTGGTTACCTTGCTCAATGTCTCGGCACGGAGGAGATCGCTTGCGTTTGTCGACAATGCGTTGGAAAGCATGTGCTCGAGCTCTTCGAAATCAGGGACTGCGACTGCTGGTAAGCTTGTTTTGTTTGATTCGAACTCGAGGGGTTCACCGAACTGGGTTAGTAACCATGAAGCCTTGCTGAACAAGGCCTCTGAGATTGGTGCTGGAGTTTTTGGAACGGTTTATAAGGTTTCGTTGGGAGATCAAGGTGGAAGAGACGTAGCTATCAAGAAGCTTGTGAAGTCGAACATGATTCAGAATGTGGAAGATTTCGACCGGGAAATCCAAATCTTGGGCAAGGTCAAGCACCCCAATTTGATCAGCTTAAAGGGTTACTACTGGACTGCACAAACTCAGCTCTTGGTCATGGAGTATGCTACCAATGGAAGTCTTCAAACTCAACTCCATGGAAGGCTTCCTTCATCTCCATCTCTCTCTTGGGATAACCGGTTCAAGATTGTGCTTGGGACAGCCAAAGGACTAGCACATTTACACCACTCATTCCGCCCGCCAATTGTTCACTACGATCTCAAGCCAACCAACATCCTTCTCGACGAAAACTTCAACCCGAAGATCTCCGATTACGGGCTTGCAAGACTGCTAACAAAGCTTGACAAGCATGTCGTAAACAACAGATTCCAAAGTGCATTGGGGTACATCGCACCAGAACTAGCATGCCAGAGCATAAGGGTGAACGAGAAATGCGACGTACACGGGTTCGGGGTGATGGTACTCGAGATCGTAACAGGACGAAGGCCGGTCGAGTACGGAGAAGACAATGTGGTAATATTGACAGACCATGTGAGGTATTTGCTAGAGAGAGGGAATGTGTTGGATTGTGTTGATCCAAGCATGAGTGAGTATTCAGAAGATGAAGTGGTGCCCATACTCAAGCTGGCTTTGGTCTGCATTTCTCAAATTCCTTCAAGCAGGCCATCCATGGCTGAAGTGGTGCAGATTCTGCAAGTAATCAAGGCTCCACTTCCACAAACAATACCACAAGGATTTTGA 2403 46.86 VSELSIDGFGLSGRIGRGFEKLQHLKVLSLSGNNFTGNLSPELVLPPSLQRVNFSRNRLSGRIPTSLIAMSSIRFLDFSDNLFSGPIPDEMFANCSLLHYLSLASNMLQGPVPNTLHTRCLYLNTLNLSANQFSGSLDLWSLTRLRTLDLSKNAFSGYLPQGISALHNLKELRLQSNQFSGPLPADLGLCLHLSTLDVSRNRLTGPLPESMRLLTSLTFLNIGFNTFSGELPQWIGNMTSLNYVEFSSNGFTGSLPLAMGGLRSVKYMSFSNNKLSGNIPETLMKCSELSVIKLEGNSLNGRVPEGLFELGLEEIDLSQNELIGSVPVGSSKLLGILQLDGNSLIGPIPDEIGNCVSLYLLLPVGGIFPSLDQSALQGNLGLCSPLLKGPCKMNVPKPLVLDPNAYPSQMGGQTSRDKPSQYSNSSPHHVFFSVSAIVAISAATFIALGVLVVTLLNVSARRRSLAFVDNALESMCSSSSKSGTATAGKLVLFDSNSRGSPNWVSNHEALLNKASEIGAGVFGTVYKVSLGDQGGRDVAIKKLVKSNMIQNVEDFDREIQILGKVKHPNLISLKGYYWTAQTQLLVMEYATNGSLQTQLHGRLPSSPSLSWDNRFKIVLGTAKGLAHLHHSFRPPIVHYDLKPTNILLDENFNPKISDYGLARLLTKLDKHVVNNRFQSALGYIAPELACQSIRVNEKCDVHGFGVMVLEIVTGRRPVEYGEDNVVILTDHVRYLLERGNVLDCVDPSMSEYSEDEVVPILKLALVCISQIPSSRPSMAEVVQILQVIKAPLPQTIPQGF 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10112947 10116158 - Cp4.1LG03g12570.1 Cpe03g01247 466964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01247 800 Gene3D Ribonuclease Inhibitor 1 119 IPR032675 -
Cpe03g01247 800 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672|GO:0006468
Cpe03g01247 800 ProSiteProfiles Protein kinase domain profile. 511 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01247 800 SUPERFAMILY L domain-like 3 205 - -
Cpe03g01247 800 SMART serkin_6 511 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01247 800 PANTHER BNAA09G02190D PROTEIN 332 361 - -
Cpe03g01247 800 SUPERFAMILY L domain-like 139 384 - -
Cpe03g01247 800 Gene3D Phosphorylase Kinase; domain 1 500 589 - -
Cpe03g01247 800 ProSitePatterns Protein kinases ATP-binding region signature. 517 542 IPR017441 GO:0005524
Cpe03g01247 800 Gene3D Transferase(Phosphotransferase) domain 1 590 794 - -
Cpe03g01247 800 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 362 795 - -
Cpe03g01247 800 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 332 361 - -
Cpe03g01247 800 CDD STKc_IRAK 517 786 - -
Cpe03g01247 800 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 333 - -
Cpe03g01247 800 PANTHER BNAA09G02190D PROTEIN 362 795 - -
Cpe03g01247 800 SUPERFAMILY Protein kinase-like (PK-like) 514 789 IPR011009 -
Cpe03g01247 800 Pfam Leucine Rich repeat 22 37 IPR001611 GO:0005515
Cpe03g01247 800 PANTHER BNAA09G02190D PROTEIN 1 333 - -
Cpe03g01247 800 Gene3D Ribonuclease Inhibitor 120 397 IPR032675 -
Cpe03g01247 800 SMART LRR_typ_2 214 238 IPR003591 -
Cpe03g01247 800 SMART LRR_typ_2 166 190 IPR003591 -
Cpe03g01247 800 SMART LRR_typ_2 22 46 IPR003591 -
Cpe03g01247 800 SMART LRR_typ_2 142 165 IPR003591 -
Cpe03g01247 800 SMART LRR_typ_2 70 94 IPR003591 -
Cpe03g01247 800 Pfam Protein kinase domain 513 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00011 Cpe-Chr3:53564 Cpe03g01247 Cpe-Chr3:10112947 1.69E-20 dispersed
Cpe03g01247 Cpe-Chr3:10112947 Cpe13g01035 Cpe-Chr13:8499842 7.96E-22 dispersed
Cpe03g01247 Cpe-Chr3:10112947 Cpe08g01262 Cpe-Chr8:9123959 6.00E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62300 PF00069 Pkinase 2.80E-45 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01247 - - csv:101217545 931.398