Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01253 ATGCGCAGGTGGCTTTGTTGTACTTGTCAAGTTGAGGAAGCCTACCCATTAGCAGAAAGTGAGCACCTGAAAAGCCCACGAAGTTATGGAGATGGTTATTATCGACGGGACTCGAAAGAGCCGGCTCCTGCCCCATATGAAGCACCAAAATCTCCACCTCCCATAGAAGTGCCAGCATTGTCTCTGGAAGAACTGAAAGAAAAGACAGACAACTTTGGGTCCAAGGCACTGATTGGCGAAGGATCTTATGGTCGAGTTTATTTTGCTAACTTAAACAATGGGAAATCTGTGGCGGTAAAGAAGCTGGATGTTTCGTCTGAATCTGATTCGAGTATTGACTTCTTGACTCAGGTTTCTACAGTCTCAAGGTTGAAACATGAAAATTTTGTTGAATTGCATGGATATTGTGTTGAAGGAAACCTCCGTGTACTTGCATATGAATTTGCAACTATGGGTTCTCTACACGACATATTGCATGGTAGAAAGGGTGTGCAAGGGGCACAGCCAGGTCCCGTGCTTGATTGGATACAGCGTGTGAGAATTGCGGTTGATGCAGCTCGAGGATTGGAATACTTGCACGAGAAAGCTACCCCAAGACTAAGTGAAGACAAAGTTAAACAATGTGTTGATCCAAGGCTGAAGGGTGAATATCCTCCCAAAGGAGTTGCCAAGCTGGCTGCTGTGGCAGCTCTGTGTGTCCAGTACGAAGCGGAGTTCAGGCCGAACATGAGCATCGTCGTTAAGGCTCTCCAGCCGCTTCTAAGGCCTCCTGCCCCGGCTCATGCTCCGGAACCGTGA 798 47.62 MRRWLCCTCQVEEAYPLAESEHLKSPRSYGDGYYRRDSKEPAPAPYEAPKSPPPIEVPALSLEELKEKTDNFGSKALIGEGSYGRVYFANLNNGKSVAVKKLDVSSESDSSIDFLTQVSTVSRLKHENFVELHGYCVEGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPVLDWIQRVRIAVDAARGLEYLHEKATPRLSEDKVKQCVDPRLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLRPPAPAHAPEP 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10153402 10157661 + Cp4.1LG03g12600.1 Cpe03g01253 466970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01253 265 Gene3D Transferase(Phosphotransferase) domain 1 150 197 - -
Cpe03g01253 265 Gene3D Transferase(Phosphotransferase) domain 1 198 256 - -
Cpe03g01253 265 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 196 262 - -
Cpe03g01253 265 PANTHER TYROSINE-PROTEIN KINASE, NON-RECEPTOR JAK/TYK2-RELATED 1 198 - -
Cpe03g01253 265 PANTHER TYROSINE-PROTEIN KINASE, NON-RECEPTOR JAK/TYK2-RELATED 196 262 - -
Cpe03g01253 265 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 198 - -
Cpe03g01253 265 SUPERFAMILY Protein kinase-like (PK-like) 62 255 IPR011009 -
Cpe03g01253 265 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Cpe03g01253 265 MobiDBLite consensus disorder prediction 21 54 - -
Cpe03g01253 265 Gene3D Phosphorylase Kinase; domain 1 48 148 - -
Cpe03g01253 265 ProSiteProfiles Protein kinase domain profile. 72 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01253 265 MobiDBLite consensus disorder prediction 21 43 - -
Cpe03g01253 265 Pfam Protein tyrosine and serine/threonine kinase 77 196 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01253 K13436 PTI1; pto-interacting protein 1 [EC:2.7.11.1] - csv:101215403 359.377
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01253 Cpe17g00994 CCT
Cpe03g01253 Cpe08g00093 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01547 Cpe-Chr2:13126429 Cpe03g01253 Cpe-Chr3:10153402 3.74E-54 dispersed
Cpe03g00826 Cpe-Chr3:5163373 Cpe03g01253 Cpe-Chr3:10153402 2.63E-68 dispersed
Cpe03g01253 Cpe-Chr3:10153402 Cpe17g00994 Cpe-Chr17:7541379 1.10E-33 dispersed
Cpe03g01253 Cpe-Chr3:10153402 Cpe08g00093 Cpe-Chr8:579297 6.92E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1140 . . . . . . . Bma05g01241 Cmo08g00086 . Cma06g01635 Cma14g01489 Car06g01390 Car14g01325 . Cpe08g00093 Cpe03g01253 Bhi01g02647 . . . . . . . . . . . . . . . Cone18ag0891 . . . . Cme07g01866 Blo02g00458 Blo07g00096 Bda11g00468 Bda13g00238 . Bpe13g00714 Bma02g00954 Bma06g01451 . Cmo06g01634 Cmo14g01526 . . Car08g00069 . . Cpe17g00994 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030155 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62301 PF07714 PK_Tyr_Ser-Thr 5.70E-18 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01253 Cpe_Chr03 FPKM 24.377119 29.154186 23.689821 24.329992 28.20121 31.32016 27.293859 28.313398 29.295149 28.871145