Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01257 ATGGAGCTCCGGGTGGCGAGTAAAGATGCTTGTCTCTCACTTCCACTCTCTCACAGATCGCCTCTCCGCTTCCAGTTGCCTTCCCCACCGCCGCATTCACTTCATCTGTCTCCCTCATGGCGGCCTTCGATCAAACGGACCATTTCTCTCTCCCGCAATCCGCACCAGAAGCGGGTCTCACAAATCATGGCGATGTCAGCTAGAAACAACGACGAATTTATTGCTGAATCTCCAGCAAAGGCGCTCCGGAGGATTCTGGAGATGCCTGGCGTTCACCAAGGCCCCGCTTGTTTCGATGCTCTCAGTGCTAAGCTAGTCGAGAGAGCTGGTTTTCTTTACTGCTTTACCAGTGGTTTTTCTATATCGGCTGCTAGATTGGCGTTGCCAGACACAGGTTTCATATCATATGGTGAAATGTTGGATCAAGGGCAACTAATCGCTCAATCGGTGTCCATTCCTGTCATTGGGGATGGTGATAATGGATATGGAAATGCAATGAATGTGAAGAGGACTGTTAAAGGATATATTAGAGCAGGCTTTGCGGGGATCATACTAGAAGATCAGGTATCTCCAAAAGCTTGTGGCCATACGCAAGGTAGGAAAGTGGTATCTAGAGAGGAGGCTGTGTTGCGGATAAAAGCAGCCGTTGATGCTAGAAAAGAAAGTGGTTCTGACATTGTCATTGTAGCACGAACTGATTCTCGTCAAGCAGTGTCTCTTAGTGAATCACTGTGGAGAGCTAGGGCCTTTGCAGATGCTGGAGCTGATGTTCTTTTCATTGATGCACTAGCTTCAAAAGACGAGATGGAGGCCTTTTGTAAAATCTCACCCAAAATACCTAAAATGGCCAATATGCTTGAAGGAGGAGGAAAGACGCCCATTTTTAATCCTCTAGAACTGGAGGAAATTGGATATAAACTTGTTGCTTATCCTCTTTCCTTGGTTGGCGTATCAATTCGGGCAATGCAGGATGCACTGCTTGCAATTAAAGGAGGCCGATTGCCTTCTCCTGGAACCTTGCCAACTTTTGGAGAGATGAAGGAAATATTGGGTTTCAACTCTTACTATGAAGAAGAGAGGAAATATGCTTCTGCTGTTAGCCAGCCTTCAATAAAAGTGGAGAGTAACATAAGCAGTCTTCAACGGAGGGTCGAAGATGATTCAGAGAAGAAAGACCAAAATCCTCAAGGTCCAGTTGTCGAAGTGATTACTCCTGAGATATACAGAAGCTACGATGCAGATGAATCAAAAGGTCCCTTCTCTGGTATCTGGTCCCGGAGATTGAGAGTCAAAATAACTGGAATAGATGGATTTGAGAGACTTGATGTCAGGATTCCTGCGGGATTCTTGGAAGGACTAACAAATATAGTTCCAGCTTTGGGAGGTGTGAATATCAAAGAACTGATGGACGATGCAGCTGGTGAAGTGGGAGGGAAACTTTTACTGGATTTTGTTGATGGCATGGGTGACCGAATTGAAGTCTTTCTGGACAGCTCCGGTGATTGGATGTGGCTTGAACTATCGAAGCACAACTGCGTGCCCAACTGCATCAAGGTCCCAAATTCCTACAGTTTCACGATTGCAGAAGCAGAACAAGGACGAACCATCCTTCTTCCTGTTGGTAGCGACCCCGCATTTTCCCGTCTTCACCTTCAGCATCTTCACTGCTCCATCTCCATTCTCCAATCGCGGCTCACTTCTGCAGCTAACACTCTCTCCAACAGTTCACTCATCAAGTGTTGCCCGCTCGAATCATCGCACAAACTAAATTGTGGTATTATGGGGGAAACTCCTGCGAAGGCGCTTCGGAAGATCCTGGATTCGCCTGGTGTTCATCTTGGTCCTGCTTGCTTTGATGCTCTCAGTGCTAAGCTTATCCAGAGAGCTGGATTTTCATATTGCTTTACTAGTGGATTTTCAATATCAGCTTCTAGATTGGGACTGCCAGATACAGGTTTTATGTCATATGGTGAAATGCTGGATCAAGGGCTACAAATTACTCAAGCTGTGTCAATTCCAGTCATTGGAGATGGTGATAATGGATATGGAAATGCAATGAATTTAAAGAGAACTGTTAAAGGATATATTCGAGCAGGCTTTGCAGGGATCATTCTCGAAGATCAGGTATCACCAAAGGCTTGTGGACATACACGAGGTAGAAAAGTAGTGTCTAGAGAGGAAGCGGTGTCATGTATAAGAGCAGCTGTTGATGCTCGAAAAGAAAGTGGCTCCGACATAGTTATTGTGGCTCGTAGTGATGCTCGACAAGCTGTGTCCCTTGATGAAGCACTATGGAGGACAAAGGCCTTTGCTGATGCTGGGGCGGACATTCTTTTTATTGATGCACTAGCTTCAGTAGAAGAGATGAAGGCTTTCTGCAAAGTCTCTCCTGAAGTACCTAAAATGGCCAATATGCTTGAAGGAGGAGGTAAAACACCAATTCTCAGTCCTCTTGAACTTGCAGAAATTGGATATAAGGTTGTTGTTTATCCTCTTTCCTTGATGGGCGTATCCATGCGAGCGATGCAGGATGCGCTACTTGCAATTAAAGGAGGTCAAATTCCTTCTGAACGCATGCCATCTTTTGAAGAAATGAAGGAAATATTAGGTTTCAACAGTTATTATGAAGAAGAGGAGAAGTATGCTGCTGCTGCTAGTCTTCCTTCGCCAGGAGATGGATCAAAACATCCCCCTTCTGACATCTCACCCCGGAGATTGAGAGTCAAAATAACTGGAACAGATGGACTTGAGAGACTTGATGCTAGGATTCCTGCTGGATCCCTGGATACCCTAACCAACATAGTTCCAGCGTTAGGAGGCATAAACATCAAAAAACTGATAGATGATGCTGCTGAGGAAGTAGGAGGAAAAGTGCTGCTGGATTTTACTGATACAACGGGTGACAGGATTCAGGATGCACCACAAATCCACACTTAA 2937 45.42 MELRVASKDACLSLPLSHRSPLRFQLPSPPPHSLHLSPSWRPSIKRTISLSRNPHQKRVSQIMAMSARNNDEFIAESPAKALRRILEMPGVHQGPACFDALSAKLVERAGFLYCFTSGFSISAARLALPDTGFISYGEMLDQGQLIAQSVSIPVIGDGDNGYGNAMNVKRTVKGYIRAGFAGIILEDQVSPKACGHTQGRKVVSREEAVLRIKAAVDARKESGSDIVIVARTDSRQAVSLSESLWRARAFADAGADVLFIDALASKDEMEAFCKISPKIPKMANMLEGGGKTPIFNPLELEEIGYKLVAYPLSLVGVSIRAMQDALLAIKGGRLPSPGTLPTFGEMKEILGFNSYYEEERKYASAVSQPSIKVESNISSLQRRVEDDSEKKDQNPQGPVVEVITPEIYRSYDADESKGPFSGIWSRRLRVKITGIDGFERLDVRIPAGFLEGLTNIVPALGGVNIKELMDDAAGEVGGKLLLDFVDGMGDRIEVFLDSSGDWMWLELSKHNCVPNCIKVPNSYSFTIAEAEQGRTILLPVGSDPAFSRLHLQHLHCSISILQSRLTSAANTLSNSSLIKCCPLESSHKLNCGIMGETPAKALRKILDSPGVHLGPACFDALSAKLIQRAGFSYCFTSGFSISASRLGLPDTGFMSYGEMLDQGLQITQAVSIPVIGDGDNGYGNAMNLKRTVKGYIRAGFAGIILEDQVSPKACGHTRGRKVVSREEAVSCIRAAVDARKESGSDIVIVARSDARQAVSLDEALWRTKAFADAGADILFIDALASVEEMKAFCKVSPEVPKMANMLEGGGKTPILSPLELAEIGYKVVVYPLSLMGVSMRAMQDALLAIKGGQIPSERMPSFEEMKEILGFNSYYEEEEKYAAAASLPSPGDGSKHPPSDISPRRLRVKITGTDGLERLDARIPAGSLDTLTNIVPALGGINIKKLIDDAAEEVGGKVLLDFTDTTGDRIQDAPQIHT 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10180533 10197146 + Cp4.1LG03g12610.1 Cpe03g01257 466974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01257 978 CDD ICL_PEPM 82 328 IPR039556 GO:0003824
Cpe03g01257 978 MobiDBLite consensus disorder prediction 883 903 - -
Cpe03g01257 978 Pfam Phosphoenolpyruvate phosphomutase 95 328 - -
Cpe03g01257 978 Pfam Phosphoenolpyruvate phosphomutase 606 848 - -
Cpe03g01257 978 MobiDBLite consensus disorder prediction 379 394 - -
Cpe03g01257 978 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 592 883 IPR015813 GO:0003824
Cpe03g01257 978 MobiDBLite consensus disorder prediction 377 398 - -
Cpe03g01257 978 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE FAMILY PROTEIN 70 496 - -
Cpe03g01257 978 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE FAMILY PROTEIN 892 972 - -
Cpe03g01257 978 Gene3D - 600 887 IPR040442 -
Cpe03g01257 978 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 70 364 IPR015813 GO:0003824
Cpe03g01257 978 CDD ICL_PEPM 602 848 IPR039556 GO:0003824
Cpe03g01257 978 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE FAMILY PROTEIN 592 885 - -
Cpe03g01257 978 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 592 885 - -
Cpe03g01257 978 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 70 496 - -
Cpe03g01257 978 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 892 972 - -
Cpe03g01257 978 Gene3D - 64 370 IPR040442 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01257 - - - bhj:120091220 860.522
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01257 Cpe-Chr3:10180533 Cpe16g00450 Cpe-Chr16:5756502 6.86E-08 dispersed
Cpe03g01257 Cpe-Chr3:10180533 Cpe05g01448 Cpe-Chr5:10098096 4.84E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1119 . . . . . . . . . . . Cma14g01497 . Car14g01329 . . Cpe03g01257 Bhi01g02631 Tan10g1238 . . . . Lcy11g1233 . . . . . . . . . . Cone11ag0627 . . . Cme07g01856 . Blo07g00101 Bda11g00470 . . Bpe13g00728 . . . . Cmo14g01532 . . . . . . . . . . . . . Cla07g01581 Cam07g1678 Cec07g1773 Cco07g1736 Clacu07g1662 Cmu07g1628 Cre07g2002 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004913 1 4 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 2 1 2 1 2 4 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01257 Cpe_Chr03 FPKM 5.00463 5.275448 3.131807 4.395825 7.419945 5.89507 5.707269 9.210492 6.404791 9.668874