Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01258 ATGGCCACAATGATAGCCCTTAGGTCTCTTTTCCAGGTTTTGGATGCCACTAGCAATGAGCCTTGGGGGCCTCATGGATCCCTTCTTGCAGATATAGCAGAGGCAACTAGAAATCAGATGAAGAAGGTCTTTGATCAAACTGTTAGAGACATAAAGCGAGAGGTCAATAAGACCGTGCTCAAAATTCCTAAAATAGAGCAGAAGGTTTTGGATGCCACTAGCAATGAGCCTTGGGGGCCTCATGGATCCCTTCTTGCAGATATAGCAGAGGCAACTAGAAATCAGATGAAGAAGGTCTTTGATCAAACTGTTAGAGACATAAAGCGAGAGGTCAATAAGACCGTGCTCAAAATTCCTAAAATAGAGCAGAAGGGGTTGACTGTTTTGGAGTACTTGGTGGGTCATGGGTCAGAGCGAGTCATAGACGACATCAGAGAACATGCATATCAGATATCGACCTTATCGGAATTTCAATACATCGATTCGAGTGCGAGGGATCAGGGTAACAATGTTAGAAAGAAATCTCTAAATCTTGTTGCCCTTGTAAATGATAAAGAAAGGATCGTTGAGGTCAGACAGAAGGCTGCTGCCAATAGGTTTCGCACCCCGTCATCTATGAGCCGTATGTATAGATCAAGAACAGGAGGATATGACGAGCGCTATGAAGGACAATATGGAAGCTACGATGGAGACAAAAATGTTGATTCTTTTGGGAGGGAAAGGGACTATGGTTTCAGAGATGATCGTTCTGGCAGAAATGAGGATTCATATAGTCGTGGTTATGAAGGACGCTATAACAGAGCTGGTTATAAGGACGATGATTATCGTGGAAGAAGTCGAAGCATTGATGATCATCAGTATGGTTCAAGGAGCAGGAGCTTTGACAGAGATGGAGAACGTACATATGATGACGATAGTCACGTTTCTTCTCGCAACAATCGTGCCAGAGCACACGAGCCATCTCCGGTTGGAAGGAAGCTTGAACGTAAATTTTCGGAACAGAATCTTAGTTTCCCGCCTAGTTATGAAGAAGCTATGAATGAATCTGGAAGTTCTGTGCATAGTCAAAGAGATGTAGAAGCTCCATCAACTACAGCTCCAAGAGCTTTTCCTCCACCGACATCCAGTACTCCGAGCCAGCCAACTAGTCATGGAACCTCTACATCCCCGCCTACCCAGGGATTTGATCGTCCTGATGAATTTGACCCCCGGGGTTCCGTTCGAGCTGCTCCGACGGCCTCGAGCAGTTCGGAGACGAATTTATTCGACTCCTTGGCCTTAGTGCCTGTTGAGCCAACTTTTAAAGACCCATTTGGTGATTCGTCTTTTAAAGCCGTTCCTTCCTCTGGTGTCCAAGATCAAGCAGATTTTCATCATGGGGAATCGGTTTCTGCAGCATCTTACTCTACACCGGACATCCCTGTTCAACCTCAACAGAACTCGCACCATCCTCGTGAAGAGTCGCTGCTACATCAAGATATTGGTGTACTGGCTGATCTCCTTCCTCCTCCTGAAACTTCACCAGCTGTTGTTTCACAACCCACATTTACAATATCAAACCAACCAGCACAACCAAATTTTTCAGCTGTCTCTGGCTTGCCTGCACAGCCAAATTCTAACTTGGGGAACTATCAGCAATATGGAAGTATTGCTCCTATGAATTTTCAAAATCAAACAGAACCAGGGAGAGAGTTTGGCAATGGGATGTTCATAACACAGGGAGGAACACCAGCTCATGTCAATTCATATATGGCTCCTCCTCATGCTGGACCTAATATACAGCCCAACAATTTTGGATCCTCTCAGGACGGTTCTGCAGTTCCCACGAGTTCTCACGTCGCACTTCAAGCTTCCAGTTCTGTAGCTCCAGTGGCTTCTTCATTTCCTGTTGTAAAATCTAACCCACAGGTTATGGGTAGTTATAATCCTCAAGCAGGAAACTATACTGCCATGGCTTACCAGCAAATTCCTCCAGTCGGATCACTTTCGACGGCATCTCAAGCTTCGAAGAATAAGTTTGAGACCAAGTCCACAGTATGGTCTGACACATTAAGCAGAGGACTTGTCAATTTAAACATATCTGGACCTAAAGCAAACCCATTGGTGGACATTGGTGTTGATTTTGAATCCCTCGGTAGGAGGGAAAAGAGGATGGAGAAGCCTAGTATAGCTCCAATGGTATCTACCATTAACATGGGTAAAGCTATGGGATCTGGTTCTGGGATAGGCCGAGCCGGTGAAGGTGTACTAAGGCCTCCTCCAAATGCGATGTCGGGTACAGGTATGGGCATGGGAATGAGAGGCTATGGAGGTATGAATCAACCCATGGGTGGCATGGGGATGAATATGGGTATGGGGCAACAAGGAATTCAAATGCAGCAACCTCGAGCGAACATGCCCGGTGTATACAACCCAATGATGGGCGCTGGAGGTTATGCCCCACAACAGCCACGGTACGGCGGTTACCGATGA 2472 46.08 MATMIALRSLFQVLDATSNEPWGPHGSLLADIAEATRNQMKKVFDQTVRDIKREVNKTVLKIPKIEQKVLDATSNEPWGPHGSLLADIAEATRNQMKKVFDQTVRDIKREVNKTVLKIPKIEQKGLTVLEYLVGHGSERVIDDIREHAYQISTLSEFQYIDSSARDQGNNVRKKSLNLVALVNDKERIVEVRQKAAANRFRTPSSMSRMYRSRTGGYDERYEGQYGSYDGDKNVDSFGRERDYGFRDDRSGRNEDSYSRGYEGRYNRAGYKDDDYRGRSRSIDDHQYGSRSRSFDRDGERTYDDDSHVSSRNNRARAHEPSPVGRKLERKFSEQNLSFPPSYEEAMNESGSSVHSQRDVEAPSTTAPRAFPPPTSSTPSQPTSHGTSTSPPTQGFDRPDEFDPRGSVRAAPTASSSSETNLFDSLALVPVEPTFKDPFGDSSFKAVPSSGVQDQADFHHGESVSAASYSTPDIPVQPQQNSHHPREESLLHQDIGVLADLLPPPETSPAVVSQPTFTISNQPAQPNFSAVSGLPAQPNSNLGNYQQYGSIAPMNFQNQTEPGREFGNGMFITQGGTPAHVNSYMAPPHAGPNIQPNNFGSSQDGSAVPTSSHVALQASSSVAPVASSFPVVKSNPQVMGSYNPQAGNYTAMAYQQIPPVGSLSTASQASKNKFETKSTVWSDTLSRGLVNLNISGPKANPLVDIGVDFESLGRREKRMEKPSIAPMVSTINMGKAMGSGSGIGRAGEGVLRPPPNAMSGTGMGMGMRGYGGMNQPMGGMGMNMGMGQQGIQMQQPRANMPGVYNPMMGAGGYAPQQPRYGGYR 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10195735 10203778 - Cp4.1LG03g12460.1 Cpe03g01258 466975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01258 823 MobiDBLite consensus disorder prediction 460 487 - -
Cpe03g01258 823 SUPERFAMILY ENTH/VHS domain 44 191 IPR008942 -
Cpe03g01258 823 Gene3D - 63 203 IPR008942 -
Cpe03g01258 823 PANTHER CLATHRIN INTERACTOR EPSIN 2-RELATED 96 124 - -
Cpe03g01258 823 PANTHER CLATHRIN INTERACTOR EPSIN 2-RELATED 124 804 - -
Cpe03g01258 823 MobiDBLite consensus disorder prediction 379 394 - -
Cpe03g01258 823 MobiDBLite consensus disorder prediction 334 362 - -
Cpe03g01258 823 PANTHER EPSIN/ENT-RELATED 124 804 - -
Cpe03g01258 823 ProSiteProfiles ENTH domain profile. 57 192 IPR013809 -
Cpe03g01258 823 MobiDBLite consensus disorder prediction 200 419 - -
Cpe03g01258 823 MobiDBLite consensus disorder prediction 233 332 - -
Cpe03g01258 823 PANTHER CLATHRIN INTERACTOR EPSIN 2-RELATED 40 95 - -
Cpe03g01258 823 MobiDBLite consensus disorder prediction 463 483 - -
Cpe03g01258 823 PANTHER CLATHRIN INTERACTOR EPSIN 2-RELATED 12 39 - -
Cpe03g01258 823 Gene3D - 10 62 IPR008942 -
Cpe03g01258 823 CDD ENTH 65 184 - -
Cpe03g01258 823 PANTHER EPSIN/ENT-RELATED 40 95 - -
Cpe03g01258 823 Pfam ENTH domain 64 188 IPR013809 -
Cpe03g01258 823 PANTHER EPSIN/ENT-RELATED 96 124 - -
Cpe03g01258 823 PANTHER EPSIN/ENT-RELATED 12 39 - -
Cpe03g01258 823 SMART enth_2 63 192 IPR013809 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01258 K12471 EPN; epsin - csv:101208671 1060.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01258 Cpe-Chr3:10195735 Cpe12g00496 Cpe-Chr12:4875534 2.70E-154 dispersed
Cpe03g01258 Cpe-Chr3:10195735 Cpe08g00095 Cpe-Chr8:590640 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1118 . . . . . . . . . . . Cma14g01498 . Car14g01330 . . Cpe03g01258 Bhi01g02630 . . . Hepe05g1275 . . . . . . . . . . . . . . . . Cme07g01854 . . . . . . . . . . Cmo14g01533 . . . . . . . . . . . . . Cla07g01582 Cam07g1679 Cec07g1774 Cco07g1737 Clacu07g1663 Cmu07g1629 Cre07g2003 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003028 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 12 1 2 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01258 Cpe_Chr03 FPKM 6.840756 5.720551 5.791353 6.583217 6.74361 6.640547 5.574251 8.307335 8.522727 9.063738