Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01262 ATGGCGTTTTTTCTGAAAACGGTTTGGTTGTTGATTGCAGTGGAATTTGGGGTTGATGGTGATAGTGAAGTGGTGGGAAATTCGACTCTGGTGGATAGTAAACCTCTCGATGAAAACGAAACAGGTGTAAGTTCTATAGAAAGGATATTCGATGAGGACCGAGACGAGAAAATAATACAAGATTCATCTGGAAGGAATGCCATTTTGGATTCAGTTCCTGGATTGCCAATAGTTCAAGCAGATGAGCCCTATGTTGGTCAGGAATTTGAAAATGAGGCAGCAGCTCATGCATTTTACAATGCTTATGCTACACGTGTGGGGTTCGTAATTCGTGTTAGCAAGCTTTCACGATCGAGACGTGATGGGACGGCTATTGGTCGAGCACTAGTCTGCAACAAAGAGGGGTACAGGATGCCTGACAAGCGGGAAAAGATCGTGAGGCAGAGGGCCGAGACGAGGGTAGGTTGCAGGGCAATGATTTTGGTGAGAAAAGTGAACTCTGGCAAATGGGTTGTCACTAAATTTGTGAAGGAACATACTCATCCTTTGTCACCTGGGAAAGGTCGAAGGGATTGCATATATGATCAATATCCTAACGAACACGATAAGATACGCGAACTGTCTCAGCAGCTTGCTATTGAGAAAAAGCGATCGGCGACATATAAAAGGCATCTAGAAGTAATATTCGAATACATCGACGAGCATAACGATAACCTGTCGAGAAAGATCCAACATATAGTAGACAATGTGAAGGAGATGGAAAGCATAGAACAGCAGAGTCATAGATAG 789 43.6 MAFFLKTVWLLIAVEFGVDGDSEVVGNSTLVDSKPLDENETGVSSIERIFDEDRDEKIIQDSSGRNAILDSVPGLPIVQADEPYVGQEFENEAAAHAFYNAYATRVGFVIRVSKLSRSRRDGTAIGRALVCNKEGYRMPDKREKIVRQRAETRVGCRAMILVRKVNSGKWVVTKFVKEHTHPLSPGKGRRDCIYDQYPNEHDKIRELSQQLAIEKKRSATYKRHLEVIFEYIDEHNDNLSRKIQHIVDNVKEMESIEQQSHR 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10242618 10244594 + Cp4.1LG03g12510.1 Cpe03g01262 466979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01262 262 Coils Coil 236 256 - -
Cpe03g01262 262 Pfam FAR1 DNA-binding domain 98 184 IPR004330 -
Cpe03g01262 262 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 12 260 - -
Cpe03g01262 262 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 12 260 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01262 - - - csv:101207941 464.922
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01262 Cpe08g00086 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01262 Cpe-Chr3:10242618 Cpe12g01132 Cpe-Chr12:9318962 1.79E-55 dispersed
Cpe03g01262 Cpe-Chr3:10242618 Cpe08g00098 Cpe-Chr8:618826 6.86E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1214 . . . . . . . . . . Cma06g01644 Cma14g01501 Car06g01397 . . Cpe08g00086 Cpe03g01262 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo06g01646 Cmo14g01537 . . . . . . . . . . . . . Cla07g01497 Cam07g1596 Cec07g1692 Cco07g1655 Clacu07g1586 Cmu07g1552 Cre07g1929 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007556 2 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49244 PF03101 FAR1 8.20E-31 CL0274 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01262 Cpe_Chr03 FPKM 27.546167 30.985914 32.713978 34.928028 27.11202 31.387041 30.191051 56.077198 50.123245 49.377544