Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01265 GATCAATGTGAAAACATTGAAGAAACACTGAACATTAGCACAATAAATGTAGCAAAAAGGAAATCTTCCTCGTATTTCATATTGTTGCATCCCAGACGACGCAAATTTAGAAGAAGGAAATTAGCGGGATCTCGAATCACAGCCAGTTTTCTCTGGACTGTTGCGGAAGAGATCCAAGGAAACGGGAAAGAAGCACAAGAGAATCCATCTGCAGTGGGTCATCACATCAGAGAGAGAGAGAGGATCAAAACGGTAGCCATGGCCTCCGCTCCGATGAGGATTGCCTTCGGTCTCCTAACCTTCGTCACCGTCGGCATGATCATCGGTGCTTTGTTTCAACTAGCATTTATAAGGAGGCTAGAGGACTCCACGGGCAACGAGTTTCTACCTGCTGGAAGGTTACATAAAACTCTGTATGATAGCCAACATCAATTACCTCGAGGTCTTCCTAATTGGATTAATGACCAAGAAGCAGAAATTCTTCGTCTTGGCTATGTTAAACCAGAAGTAGTAAGCTGGTCACCACGAATCATTGTATTGCATAATTTCTTGAGCCCAGAGGAGTGTGACTACCTTAAGGCAATAGCACTTCCTCACCTTGAAATTTCCACTGTTGTGGATACAAAAACCGGGAAGGGAGTTAAGAGTGATTTCAGAACGAGCTCGGGAATGTTTTTAGGCCATCGAGATAAAAAATTTCCGATGGTCCAGGCAATCGAAAAAAGAATTTCTGTCTATTCTCAAATACCAATAGAAAATGGAGAGTTCATTCAAGTGTTAAGGTACGAGAAGAATCAATTTTACAAGCCTCATCATGACTACTTTTCTGATACTTATAACTTGATGCATGGTGGTCAGCGAATTGCAACCATGCTTATGTATCTAAGTGAAAACGTTGAAGGTGGAGAAACCTACTTTCCGAAGGCTGGTTCTGGTGAGTGTAGTTGTGGCGGGAAGACCGTTCCAGGACTGTCAGTTAAACCAGTCAGAGGAGATGCAGTGCTTTTCTGGAGTATGGGGTTGGATGGACAGTCGGATCCAAATAGCATCCATGGAGGTTGTGAAGTGCTGTCAGGCGAAAAATGGTCTGCAACAAAATGGATGAGGCAAAAGAGTACTCTGGTACGAAGGTACCAACTCAAAACTTTTTAG 1152 43.14 DQCENIEETLNISTINVAKRKSSSYFILLHPRRRKFRRRKLAGSRITASFLWTVAEEIQGNGKEAQENPSAVGHHIRERERIKTVAMASAPMRIAFGLLTFVTVGMIIGALFQLAFIRRLEDSTGNEFLPAGRLHKTLYDSQHQLPRGLPNWINDQEAEILRLGYVKPEVVSWSPRIIVLHNFLSPEECDYLKAIALPHLEISTVVDTKTGKGVKSDFRTSSGMFLGHRDKKFPMVQAIEKRISVYSQIPIENGEFIQVLRYEKNQFYKPHHDYFSDTYNLMHGGQRIATMLMYLSENVEGGETYFPKAGSGECSCGGKTVPGLSVKPVRGDAVLFWSMGLDGQSDPNSIHGGCEVLSGEKWSATKWMRQKSTLVRRYQLKTF 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10257315 10271922 + Cp4.1LG03g12520.1 Cpe03g01265 466982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01265 383 SMART p4hc 175 369 IPR006620 GO:0005506|GO:0016705|GO:0031418
Cpe03g01265 383 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 253 370 IPR005123 -
Cpe03g01265 383 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 87 373 IPR045054 -
Cpe03g01265 383 Pfam 2OG-Fe(II) oxygenase superfamily 257 369 IPR044862 -
Cpe03g01265 383 Gene3D q2cbj1_9rhob like domain 168 369 - -
Cpe03g01265 383 PANTHER BNAA04G24820D PROTEIN 87 373 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01265 K00472 P4HA; prolyl 4-hydroxylase [EC:1.14.11.2] - csv:101206818 536.184
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01265 Cpe08g00102 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01265 Cpe-Chr3:10257315 Cpe19g00882 Cpe-Chr19:6461490 5.81E-75 dispersed
Cpe03g01265 Cpe-Chr3:10257315 Cpe08g00102 Cpe-Chr8:644776 3.67E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1099 . . . . . Bpe14g01050 . . . . Cma06g01625 . . . Sed02g1052 Cpe08g00102 Cpe03g01265 Bhi01g02618 Tan10g1227 Cmetu07g0599 . Hepe05g1285 . Lcy11g1242 . . . . . . . . . . Cone11ag0636 . . . . . Blo07g00195 . Bda13g00264 . Bpe13g00639 Bma02g00980 . . Cmo06g01621 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007865 1 2 0 1 1 1 2 1 2 1 1 1 2 1 1 3 1 1 2 1 1 1 1 0 2 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01265 Cpe_Chr03 FPKM 0.0 0.823437 0.0 0.695762 0.829323 0.0 0.0 0.462432 0.0 0.0