Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01269 ATGTCCAGTTCCAGTGATTCTCCGTCCGCCTTCGACAGACCTCGCTCCGTCATCAAGAAGATTCTCGCTAAACTCCAGAACGAAGGCGACGGCGCCGTCGTTCGTCGAGGCATCGGAAGGAATGATTTGAAGAATCTGGATCCATTTCTCATGCTCGATGATTTCTCTGTCACTCCACCGGCTGGATTCCCCGATCATCCTCACAGAGGTTTTGAGACAGTGACGTATATGTTACAAGGAGGGATTACCCATCAAGATTTTGCTGGCCACAAGGGTACAATTAGAACAGGGGATGTCCAGTGGATGACAGCGGGACGAGGTATAGTCCATTCTGAAATGCCTGCTGGTGCAGGTTCTCAAAAGGGCTTGCAGCTTTGGATCAATCTTGCATCCCGTGACAAAATGATGAAGCCAAGGTATCAGGAGATCCCAAGCGACAACATTCCGAGAGCAGAGAAAGACGGTGTGGAAGTTCGTGTCATAGCAGGCGAGTCCATGGGAGTCCGTTCTCCAATCTACACTCAAACGCCAACTATGTACCTCGACTTCACTTTGAAACCAAGAGCTCAAGTGCATCAAAGCATCCCAGACACATGGACCTCTTTCGTGTACATAATCGACGGTGAAGGAGTGTTCGGGTCCCCGAGTTCGTCCCTGGTGGCTGCTCACCATGTCCTAGTATTGGGAGGTGGAAATGGGGTAAGTGTGTGGAACAAATCTTCAAAGCCATTGAGGTTTGTTCTGATCGCAGGGAAGCCTCTGAATGAACCAATTGTTCAATATGGACCGTTTGTGATGAACTCGCAATCTGAAATTGCACAAGCATTTGAGGACTACCGCTATGCCAAAAATGGATTTGAAATGGCTAAGTATTGGAGATCTCAGTGA 888 48.65 MSSSSDSPSAFDRPRSVIKKILAKLQNEGDGAVVRRGIGRNDLKNLDPFLMLDDFSVTPPAGFPDHPHRGFETVTYMLQGGITHQDFAGHKGTIRTGDVQWMTAGRGIVHSEMPAGAGSQKGLQLWINLASRDKMMKPRYQEIPSDNIPRAEKDGVEVRVIAGESMGVRSPIYTQTPTMYLDFTLKPRAQVHQSIPDTWTSFVYIIDGEGVFGSPSSSLVAAHHVLVLGGGNGVSVWNKSSKPLRFVLIAGKPLNEPIVQYGPFVMNSQSEIAQAFEDYRYAKNGFEMAKYWRSQ 295
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 10287007 10289051 + Cp4.1LG03g12390.1 Cpe03g01269 466986
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01269 295 Gene3D Jelly Rolls 149 254 IPR014710 -
Cpe03g01269 295 CDD cupin_pirin_C 177 253 - -
Cpe03g01269 295 PANTHER PIRIN-RELATED 8 295 IPR012093 -
Cpe03g01269 295 CDD cupin_pirin_N 32 129 - -
Cpe03g01269 295 PIRSF Pirin 13 293 IPR012093 -
Cpe03g01269 295 Pfam Pirin 35 127 IPR003829 -
Cpe03g01269 295 Gene3D Jelly Rolls 28 280 IPR014710 -
Cpe03g01269 295 PANTHER PIRIN-LIKE PROTEIN 8 295 - -
Cpe03g01269 295 SUPERFAMILY RmlC-like cupins 15 293 IPR011051 -
Cpe03g01269 295 Pfam Pirin C-terminal cupin domain 180 285 IPR008778 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00802 Cpe-Chr2:5136619 Cpe03g01269 Cpe-Chr3:10287007 1.65E-145 dispersed
Cpe03g01269 Cpe-Chr3:10287007 Cpe06g00791 Cpe-Chr6:5063967 3.50E-104 dispersed
Cpe03g01269 Cpe-Chr3:10287007 Cpe08g00104 Cpe-Chr8:664627 1.74E-172 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01269 K06911 - csv:101205861 541.576