Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe03g01269 | ATGTCCAGTTCCAGTGATTCTCCGTCCGCCTTCGACAGACCTCGCTCCGTCATCAAGAAGATTCTCGCTAAACTCCAGAACGAAGGCGACGGCGCCGTCGTTCGTCGAGGCATCGGAAGGAATGATTTGAAGAATCTGGATCCATTTCTCATGCTCGATGATTTCTCTGTCACTCCACCGGCTGGATTCCCCGATCATCCTCACAGAGGTTTTGAGACAGTGACGTATATGTTACAAGGAGGGATTACCCATCAAGATTTTGCTGGCCACAAGGGTACAATTAGAACAGGGGATGTCCAGTGGATGACAGCGGGACGAGGTATAGTCCATTCTGAAATGCCTGCTGGTGCAGGTTCTCAAAAGGGCTTGCAGCTTTGGATCAATCTTGCATCCCGTGACAAAATGATGAAGCCAAGGTATCAGGAGATCCCAAGCGACAACATTCCGAGAGCAGAGAAAGACGGTGTGGAAGTTCGTGTCATAGCAGGCGAGTCCATGGGAGTCCGTTCTCCAATCTACACTCAAACGCCAACTATGTACCTCGACTTCACTTTGAAACCAAGAGCTCAAGTGCATCAAAGCATCCCAGACACATGGACCTCTTTCGTGTACATAATCGACGGTGAAGGAGTGTTCGGGTCCCCGAGTTCGTCCCTGGTGGCTGCTCACCATGTCCTAGTATTGGGAGGTGGAAATGGGGTAAGTGTGTGGAACAAATCTTCAAAGCCATTGAGGTTTGTTCTGATCGCAGGGAAGCCTCTGAATGAACCAATTGTTCAATATGGACCGTTTGTGATGAACTCGCAATCTGAAATTGCACAAGCATTTGAGGACTACCGCTATGCCAAAAATGGATTTGAAATGGCTAAGTATTGGAGATCTCAGTGA | 888 | 48.65 | MSSSSDSPSAFDRPRSVIKKILAKLQNEGDGAVVRRGIGRNDLKNLDPFLMLDDFSVTPPAGFPDHPHRGFETVTYMLQGGITHQDFAGHKGTIRTGDVQWMTAGRGIVHSEMPAGAGSQKGLQLWINLASRDKMMKPRYQEIPSDNIPRAEKDGVEVRVIAGESMGVRSPIYTQTPTMYLDFTLKPRAQVHQSIPDTWTSFVYIIDGEGVFGSPSSSLVAAHHVLVLGGGNGVSVWNKSSKPLRFVLIAGKPLNEPIVQYGPFVMNSQSEIAQAFEDYRYAKNGFEMAKYWRSQ | 295 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 10287007 | 10289051 | + | Cp4.1LG03g12390.1 | Cpe03g01269 | 466986 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe03g01269 | 295 | Gene3D | Jelly Rolls | 149 | 254 | IPR014710 | - | |
| Cpe03g01269 | 295 | CDD | cupin_pirin_C | 177 | 253 | - | - | |
| Cpe03g01269 | 295 | PANTHER | PIRIN-RELATED | 8 | 295 | IPR012093 | - | |
| Cpe03g01269 | 295 | CDD | cupin_pirin_N | 32 | 129 | - | - | |
| Cpe03g01269 | 295 | PIRSF | Pirin | 13 | 293 | IPR012093 | - | |
| Cpe03g01269 | 295 | Pfam | Pirin | 35 | 127 | IPR003829 | - | |
| Cpe03g01269 | 295 | Gene3D | Jelly Rolls | 28 | 280 | IPR014710 | - | |
| Cpe03g01269 | 295 | PANTHER | PIRIN-LIKE PROTEIN | 8 | 295 | - | - | |
| Cpe03g01269 | 295 | SUPERFAMILY | RmlC-like cupins | 15 | 293 | IPR011051 | - | |
| Cpe03g01269 | 295 | Pfam | Pirin C-terminal cupin domain | 180 | 285 | IPR008778 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe02g00802 | Cpe-Chr2:5136619 | Cpe03g01269 | Cpe-Chr3:10287007 | 1.65E-145 | dispersed | |
| Cpe03g01269 | Cpe-Chr3:10287007 | Cpe06g00791 | Cpe-Chr6:5063967 | 3.50E-104 | dispersed | |
| Cpe03g01269 | Cpe-Chr3:10287007 | Cpe08g00104 | Cpe-Chr8:664627 | 1.74E-172 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe03g01269 | K06911 | - | csv:101205861 | 541.576 |