Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe03g01271 | ATGTACCAATCAAATTCCTCCTCCTCTTCCTCTCAGAAATTCATGGCCTCCGCCAACGCCGGCGTCGGTAGCGGCGGCGGTGGTGGTGGTGGTGGCGGTGGTGGTGGTGGTCTCACTCGGTACGGTTCCGCGCCTGGATCTCTTCTGACTTCGGCAGTGGATTCCGTGATTGGAAGTCGGCATCCGGACTCTGTTTCCTCGCTCCATACGCCGCCGTCGTTCAGTGGCCACTACTTCTCCTCCGCCGACTCCTCCCTGAAATCGTCGTCGTCCACTGCCCCTGCCGCGAGGTCGTACGGAATCCATGATTTAGCCCTAGGCGATTTCTCGACGGCTAGAAATTTCAATAGCAATGGTGGTCAATCCTCTTCCTCTTCGCCGTTAGTTCGCCAGAAAAGCTCGCCGGCTGGATTCCTCAGCCATCTCTCCGTCGCCGAACGAAACGGAGGGTTTTCATTGACAATGGGAGGTGGTGGGAATGGCATAGGAAGACTGAAGTCCCAAGTGAGAATGAACGGCCAAGATTCACTTTCTCAAATCTCTGAAATGAGTGAAAGCTTTATAGAGGCAGCCAATTCCTCTGGCAATGGCCTTACCCCCTCTACCTTTGGCATGGACTCTTCTTGGGACACTTCCAATAACTCCATTGTCTTTGGTGCCCCTCATGCTAAAACTTCCCGGCACCATCCCGACGCGGAGTTCTTCACCACCCTCGAGTCCCAGTTTAGTATGCCGCAGACAACTCTAGAAATGGCAACTGTGGAGAGGCTGCTTCATATCCCTGAACACTCAGCTCCTTGTAAGATTCGAGCTAAGCGTGGTTGTGCCACTCATCCTCGTAGTATCGCCGAACGGGAGAGGAGAACGAGAATCAGTGGAAAATTGAAGAAACTTCAAGACCTTGTTCCCAACATGGATAAGCAAACAAGCTACTCAGACATGTTAGACTTAGCCGTGCAACATATCAAAGGTCTTCAACATCAAATTCAGATGCTTAACAAAGAAGCTGAGAGTTGCACCTGTGGAAACAAAGAATGCTTATAA | 1044 | 51.53 | MYQSNSSSSSSQKFMASANAGVGSGGGGGGGGGGGGGLTRYGSAPGSLLTSAVDSVIGSRHPDSVSSLHTPPSFSGHYFSSADSSLKSSSSTAPAARSYGIHDLALGDFSTARNFNSNGGQSSSSSPLVRQKSSPAGFLSHLSVAERNGGFSLTMGGGGNGIGRLKSQVRMNGQDSLSQISEMSESFIEAANSSGNGLTPSTFGMDSSWDTSNNSIVFGAPHAKTSRHHPDAEFFTTLESQFSMPQTTLEMATVERLLHIPEHSAPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQIQMLNKEAESCTCGNKECL | 347 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 10292768 | 10297839 | - | Cp4.1LG03g12350.1 | Cpe03g01271 | 466988 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe03g01271 | 347 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Cpe03g01271 | 347 | PANTHER | TRANSCRIPTION FACTOR BHLH129 | 37 | 339 | - | - | |
| Cpe03g01271 | 347 | Coils | Coil | 315 | 335 | - | - | |
| Cpe03g01271 | 347 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 37 | 339 | - | - | |
| Cpe03g01271 | 347 | CDD | bHLH_AtbHLH_like | 280 | 332 | IPR045239 | - | |
| Cpe03g01271 | 347 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 278 | 339 | IPR036638 | GO:0046983 | |
| Cpe03g01271 | 347 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 275 | 325 | IPR011598 | GO:0046983 | |
| Cpe03g01271 | 347 | Gene3D | - | 276 | 344 | IPR036638 | GO:0046983 | |
| Cpe03g01271 | 347 | Pfam | Helix-loop-helix DNA-binding domain | 280 | 326 | IPR011598 | GO:0046983 | |
| Cpe03g01271 | 347 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Cpe03g01271 | 347 | SMART | finulus | 281 | 331 | IPR011598 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe03g01271 | Cpe-Chr3:10292768 | Cpe18g00157 | Cpe-Chr18:3200521 | 5.29E-42 | dispersed | |
| Cpe03g01271 | Cpe-Chr3:10292768 | Cpe08g00105 | Cpe-Chr8:667528 | 1.04E-141 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49245 | PF00010 | HLH | 1.00E-08 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe03g01271 | - | - | bhj:120087044 | 489.574 |