Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01277 ATGGACAACGAGAAGCCCCAATGCCGTGGGGGAGGATTTCTGCACGAATCAACTCGTTACTCGGGGTTTTCATCGGCTGAAAGTAGTTTCAATGGAAAATCTGAGGCAGCCTCGTCTTCAATGTCATTGCCTCCATTGGCTCCGAGTGGTAATTCCGATTGGGGTCAATCTGGCCGTGGAATGTCCACCGATTCCAATCGGTTTAGCCATGATATTAGTCGAATGCCTGAAAATCCGCGGCGAAATGTTGGTCACAGACGTGCTCATTCAGAGATTCTGACCCTCCCAGATGATATCTGTTTCGATAGTGACCTTGGTATCATTGGCGGTGGTGATGGGCCTTCTCTTTCCGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCCTCCACTGGTACTTCTGCTACTCAAGTGGGTGATTCATCTTCCTCTGTTGTAGAAGCAGCGGCTACTTCTACAGATGATATTGCTGTTGGTTTGAAGGAGAGGCCGAGAGTTAGACATCAGCATAGCCAGTCCATGGACGGCTTGACAAACATCAAACCTGAGATGCTTGTCACGGGGTCTGAAGAAGCCTCTGCAGCTGACTCCAAGAAAGCCGTGTCAGCTGCTAAGCTTGCTGAGCTTGCGTTGATTGACCCCAAACGTGCAAAAAGGATATGGGCGAACAGACAGTCAGCTGCACGGTCAAAGGAACGAAAGATGCGGTACATTGCTGAGCTTGAAAGGAAAGTTCAAACATTGCAAACAGAGGCAACTTCCTTGTCTACTCAGTTGACTCTCTTACAGAGAGATGCAAATGGTATCACTGCCGAGAACAGTGAATTAAAGCTGCGATTGCAGACAATGGAACAGCAGGTTCACCTGCAAGATGCTTTAAATGAAGCACTGAAAGAAGAAATTCAGCATTTGAAAGTTTTGACTGGCCAAGCAATGCCAAACGGTAGATCAATCACAAACTTCGCTTCCTTTGGAGGCGGCCAACAATTCTATCCTCCAAACAATCAAGCAGTTCATACTTTGTTAACTGCGCAGCAGTTTCAGCAACTTCAAATACAATCCCAACAGCAACAGCAACAGCAACAGCATTTTCAGTACCAGCAGCTGCATCAGCTTCAGCAGCAGCAGGCTGGAGACATCAGAATGAAACGATCCATATCTCCTCAAAGCTCAAAAGACGCTGCATCGGACACGAAGCCTCCTCCTACCTCTTGTTGA 1239 46.97 MDNEKPQCRGGGFLHESTRYSGFSSAESSFNGKSEAASSSMSLPPLAPSGNSDWGQSGRGMSTDSNRFSHDISRMPENPRRNVGHRRAHSEILTLPDDICFDSDLGIIGGGDGPSLSDDTEEDLLSMYLDMDKFNSSTGTSATQVGDSSSSVVEAAATSTDDIAVGLKERPRVRHQHSQSMDGLTNIKPEMLVTGSEEASAADSKKAVSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSTQLTLLQRDANGITAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKVLTGQAMPNGRSITNFASFGGGQQFYPPNNQAVHTLLTAQQFQQLQIQSQQQQQQQQHFQYQQLHQLQQQQAGDIRMKRSISPQSSKDAASDTKPPPTSC 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10340875 10345705 + Cp4.1LG03g12370.1 Cpe03g01277 466994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01277 412 Gene3D - 221 273 - -
Cpe03g01277 412 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 406 - -
Cpe03g01277 412 Pfam bZIP transcription factor 222 270 IPR004827 GO:0003700|GO:0006355
Cpe03g01277 412 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 406 - -
Cpe03g01277 412 Coils Coil 238 307 - -
Cpe03g01277 412 MobiDBLite consensus disorder prediction 70 86 - -
Cpe03g01277 412 CDD bZIP_plant_RF2 223 272 IPR044759 GO:0003700|GO:0006355
Cpe03g01277 412 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 220 283 IPR004827 GO:0003700|GO:0006355
Cpe03g01277 412 SUPERFAMILY Leucine zipper domain 222 272 IPR046347 GO:0003700|GO:0006355
Cpe03g01277 412 MobiDBLite consensus disorder prediction 1 86 - -
Cpe03g01277 412 MobiDBLite consensus disorder prediction 18 69 - -
Cpe03g01277 412 MobiDBLite consensus disorder prediction 382 412 - -
Cpe03g01277 412 SMART brlzneu 218 282 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01277 Cpe-Chr3:10340875 Cpe08g00112 Cpe-Chr8:722843 6.05E-174 dispersed
Cpe16g00688 Cpe-Chr16:7121247 Cpe03g01277 Cpe-Chr3:10340875 4.45E-44 dispersed
Cpe03g01277 Cpe-Chr3:10340875 Cpe08g00110 Cpe-Chr8:710408 1.80E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49246 PF00170 bZIP_1 1.00E-08 CL0018 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01277 - - csv:101212010 626.706