Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe03g01277 | ATGGACAACGAGAAGCCCCAATGCCGTGGGGGAGGATTTCTGCACGAATCAACTCGTTACTCGGGGTTTTCATCGGCTGAAAGTAGTTTCAATGGAAAATCTGAGGCAGCCTCGTCTTCAATGTCATTGCCTCCATTGGCTCCGAGTGGTAATTCCGATTGGGGTCAATCTGGCCGTGGAATGTCCACCGATTCCAATCGGTTTAGCCATGATATTAGTCGAATGCCTGAAAATCCGCGGCGAAATGTTGGTCACAGACGTGCTCATTCAGAGATTCTGACCCTCCCAGATGATATCTGTTTCGATAGTGACCTTGGTATCATTGGCGGTGGTGATGGGCCTTCTCTTTCCGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCCTCCACTGGTACTTCTGCTACTCAAGTGGGTGATTCATCTTCCTCTGTTGTAGAAGCAGCGGCTACTTCTACAGATGATATTGCTGTTGGTTTGAAGGAGAGGCCGAGAGTTAGACATCAGCATAGCCAGTCCATGGACGGCTTGACAAACATCAAACCTGAGATGCTTGTCACGGGGTCTGAAGAAGCCTCTGCAGCTGACTCCAAGAAAGCCGTGTCAGCTGCTAAGCTTGCTGAGCTTGCGTTGATTGACCCCAAACGTGCAAAAAGGATATGGGCGAACAGACAGTCAGCTGCACGGTCAAAGGAACGAAAGATGCGGTACATTGCTGAGCTTGAAAGGAAAGTTCAAACATTGCAAACAGAGGCAACTTCCTTGTCTACTCAGTTGACTCTCTTACAGAGAGATGCAAATGGTATCACTGCCGAGAACAGTGAATTAAAGCTGCGATTGCAGACAATGGAACAGCAGGTTCACCTGCAAGATGCTTTAAATGAAGCACTGAAAGAAGAAATTCAGCATTTGAAAGTTTTGACTGGCCAAGCAATGCCAAACGGTAGATCAATCACAAACTTCGCTTCCTTTGGAGGCGGCCAACAATTCTATCCTCCAAACAATCAAGCAGTTCATACTTTGTTAACTGCGCAGCAGTTTCAGCAACTTCAAATACAATCCCAACAGCAACAGCAACAGCAACAGCATTTTCAGTACCAGCAGCTGCATCAGCTTCAGCAGCAGCAGGCTGGAGACATCAGAATGAAACGATCCATATCTCCTCAAAGCTCAAAAGACGCTGCATCGGACACGAAGCCTCCTCCTACCTCTTGTTGA | 1239 | 46.97 | MDNEKPQCRGGGFLHESTRYSGFSSAESSFNGKSEAASSSMSLPPLAPSGNSDWGQSGRGMSTDSNRFSHDISRMPENPRRNVGHRRAHSEILTLPDDICFDSDLGIIGGGDGPSLSDDTEEDLLSMYLDMDKFNSSTGTSATQVGDSSSSVVEAAATSTDDIAVGLKERPRVRHQHSQSMDGLTNIKPEMLVTGSEEASAADSKKAVSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSTQLTLLQRDANGITAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKVLTGQAMPNGRSITNFASFGGGQQFYPPNNQAVHTLLTAQQFQQLQIQSQQQQQQQQHFQYQQLHQLQQQQAGDIRMKRSISPQSSKDAASDTKPPPTSC | 412 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 10340875 | 10345705 | + | Cp4.1LG03g12370.1 | Cpe03g01277 | 466994 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe03g01277 | 412 | Gene3D | - | 221 | 273 | - | - | |
Cpe03g01277 | 412 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 7 | 406 | - | - | |
Cpe03g01277 | 412 | Pfam | bZIP transcription factor | 222 | 270 | IPR004827 | GO:0003700|GO:0006355 | |
Cpe03g01277 | 412 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 7 | 406 | - | - | |
Cpe03g01277 | 412 | Coils | Coil | 238 | 307 | - | - | |
Cpe03g01277 | 412 | MobiDBLite | consensus disorder prediction | 70 | 86 | - | - | |
Cpe03g01277 | 412 | CDD | bZIP_plant_RF2 | 223 | 272 | IPR044759 | GO:0003700|GO:0006355 | |
Cpe03g01277 | 412 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 220 | 283 | IPR004827 | GO:0003700|GO:0006355 | |
Cpe03g01277 | 412 | SUPERFAMILY | Leucine zipper domain | 222 | 272 | IPR046347 | GO:0003700|GO:0006355 | |
Cpe03g01277 | 412 | MobiDBLite | consensus disorder prediction | 1 | 86 | - | - | |
Cpe03g01277 | 412 | MobiDBLite | consensus disorder prediction | 18 | 69 | - | - | |
Cpe03g01277 | 412 | MobiDBLite | consensus disorder prediction | 382 | 412 | - | - | |
Cpe03g01277 | 412 | SMART | brlzneu | 218 | 282 | IPR004827 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g01277 | Cpe-Chr3:10340875 | Cpe08g00112 | Cpe-Chr8:722843 | 6.05E-174 | dispersed | |
Cpe16g00688 | Cpe-Chr16:7121247 | Cpe03g01277 | Cpe-Chr3:10340875 | 4.45E-44 | dispersed | |
Cpe03g01277 | Cpe-Chr3:10340875 | Cpe08g00110 | Cpe-Chr8:710408 | 1.80E-129 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49246 | PF00170 | bZIP_1 | 1.00E-08 | CL0018 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe03g01277 | - | - | csv:101212010 | 626.706 |