Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01278 ATGCCTCACTTTCGCTCAATCTTCTCCAAATTTAAGTCTCCTAACAAATCCCTTTCTGCTTTTACATCGTCTTCTTCCCTTCATTACCTGCGCGCCAATGCCTCAACTTCTGGATCTCATTTCTCTTCTTTGATCTCCGATTTCGTTCAAAAACAACCAAATAACGCAAATTTCTCAAAATTTCCATCTGGGAATTGGCTGAAATACTTTGGTTTAAGAGGTTACAGCAGAGGCACGGTTCGGAGTTGCGTGGATTTGGTTAGAAGATTCAGTAGTGAGGCGGAACGAGAGTCTATAGAATATGATGTTGTTATCATTGGAGCCGGACCTGCTGGGCTATCTGCGGCGATTCGGTTGAAGCAAATGTGTCAAGAGAAGGGTGTTGATTTATCTGTTTGTGTAGTAGAGAAGGGCGCTGAAGTTGGCGCTCATATCCTCTCTGGAAATGTTTTTGAACCCCGAGCATTGGATGAACTAATCCCCACATGGAAAGAAGATGAGGCCCCTATCAGTGTCCCTGTAACTTCTGATAAGTTTCAGTTTCTAACAAAAAATCGTGCCTTTTCACTTCCTTCCCCGTTTAATAATGAAGGAAACTTTGTGATAAGTTTAAGTCAGTTAGTTCGTTGGATGGGAATGAAAGCTGAAGAGTTGGGAGTAGAAATATATCCAGGATTTGCTGCTAAAGAGGTATTATATGATACAACAGATACAGTTGTTGGCATTAGAACTAATGACATGGGAGTAGCAAAAGATGGCTCAAAGAAGGATAATTTTCAACTTGGTGTAGATTTGAGAGGGCGCATAACGCTTCTGGCTGAGGGATGCCGAGGATCAATATCAGAGAAATTAATTAAAAAATACAGTTTGAGGGAGAAAGTAAACGCTCAGCATCAGACGTATGCTTTGGGAATTAAAGAGGTGTGGGAAATAGACGAGGACAAACATGATCCAGGAGCTGTGCTTCATACTTTGGGTTGGCCCTTGAATCATAAGACGTATGGAGGCTCGTTTTTGTACCACATGAAGGATAGACAGATTTCTATTGGCCTTGTAGTTGCTCTAAATTATCAGAATCCTTTCTTGAATCCTTATGAAGAATTTCAGAAATTAAAACATCATCCTGTCATCAAAGCACTTCTAGAAGGTGGGACAGTTGTGCAATATGGGGCTCGAACGTTAAATGAAGGCGGTCTTCAGTCTATTCCATATCCAGTTTTCCCGGGTGGAGCAATTATTGGATGTTCAGCTGGCTTTTTAAATGTACCAAAGATTAAGGGAACACACACTGCAATGAAGTCAGGAATGCTGGCAGCTGAGGCTGCATTTGACACTCTTCATGGAGGCTTGAAAATGGATGTGTACTGGGATAGTTTGCGAGGTTCCTGGATATGGGAAGAACTATATCGGGCTCGGAACTATCGACCTGCATTCGAGCATGGTCTTATCCCGGGCTTGACCCTAAGTGCCCTGGAGCACTATGTGCTTAAAGGAAGGTCCCCTCTCACACTAAAGCATGGGAAACCTGACCACCAAGCTACAGATGTTGCAAGTTTACATACTCCGATCGAATATCCAAAGCATGATAGTCTTCTGTCATTCGATGTGCCGACCTCGCTACACAGGAGCAACACAAACCATGAACATGATCAGCCAGCACACCTTCGCTTAAGGGACCCTAAGATTCCCGAGGAAGTAAATTTGAAAGAATACGCTGCACCCGAGTCAAGATATTGTCCCGCACGTGTATACGAGTACATACCTGATGAAAACAACCAGATGAAGTTGCAGATTAATGCTCAAAACTGTCTTCATTGCAAGGCTTGTGATATTAAGGACCCGAAACAGAACATCGAGTGGAGCGTCCCGGAGGGCGGTGGCGGTCCTGGCTACTCCGTCATGTAA 1905 43.57 MPHFRSIFSKFKSPNKSLSAFTSSSSLHYLRANASTSGSHFSSLISDFVQKQPNNANFSKFPSGNWLKYFGLRGYSRGTVRSCVDLVRRFSSEAERESIEYDVVIIGAGPAGLSAAIRLKQMCQEKGVDLSVCVVEKGAEVGAHILSGNVFEPRALDELIPTWKEDEAPISVPVTSDKFQFLTKNRAFSLPSPFNNEGNFVISLSQLVRWMGMKAEELGVEIYPGFAAKEVLYDTTDTVVGIRTNDMGVAKDGSKKDNFQLGVDLRGRITLLAEGCRGSISEKLIKKYSLREKVNAQHQTYALGIKEVWEIDEDKHDPGAVLHTLGWPLNHKTYGGSFLYHMKDRQISIGLVVALNYQNPFLNPYEEFQKLKHHPVIKALLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCSAGFLNVPKIKGTHTAMKSGMLAAEAAFDTLHGGLKMDVYWDSLRGSWIWEELYRARNYRPAFEHGLIPGLTLSALEHYVLKGRSPLTLKHGKPDHQATDVASLHTPIEYPKHDSLLSFDVPTSLHRSNTNHEHDQPAHLRLRDPKIPEEVNLKEYAAPESRYCPARVYEYIPDENNQMKLQINAQNCLHCKACDIKDPKQNIEWSVPEGGGGPGYSVM 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10346637 10355952 - Cp4.1LG03g12330.1 Cpe03g01278 466995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01278 634 Pfam NAD(P)-binding Rossmann-like domain 105 150 - -
Cpe03g01278 634 Pfam Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 532 632 - -
Cpe03g01278 634 PANTHER ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE 92 634 IPR040156 GO:0004174|GO:0022900
Cpe03g01278 634 SUPERFAMILY 4Fe-4S ferredoxins 534 633 - -
Cpe03g01278 634 Gene3D - 535 629 - -
Cpe03g01278 634 PRINTS Pyridine nucleotide disulphide reductase class-II signature 102 124 - -
Cpe03g01278 634 PRINTS Pyridine nucleotide disulphide reductase class-II signature 427 446 - -
Cpe03g01278 634 Gene3D - 172 534 - -
Cpe03g01278 634 SUPERFAMILY FAD-linked reductases, C-terminal domain 300 396 - -
Cpe03g01278 634 Gene3D - 100 471 IPR036188 -
Cpe03g01278 634 SUPERFAMILY FAD/NAD(P)-binding domain 97 530 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01278 K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] - csv:101211771 1150.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1268 Blo01g00193 . . Bda08g00158 . . . Bma05g01166 . . . Cma14g01519 . Car14g01343 Sed12g0692 . Cpe03g01278 Bhi01g01188 Tan10g1201 Cmetu06g1782 . Hepe05g1300 . Lcy11g1259 . . . . . . . . . Cone18ag0851 . . . . . . . . Bda13g00549 Bpe05g00974 . . . . . Cmo14g01554 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012450 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01278 Cpe_Chr03 FPKM 0.0 0.0 0.0 0.0 0.085413 0.0 0.249308 0.0 0.11527 0.0