Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01281 ATGGTCGCTTCCTCGGTTCTTATGGTGGCTGAGAAGCCTAGCATTGCGCTCTCGATTGCTTCTGCACTCTCTCATGGCCAAATGTCTACAAGAAAGGGTAGCACAGAGGTACATGAATTCGATGGGAGATTTCTTGGGCATCATGCTCATTACAAAGTGACATCGGTTATCGGACATGTTTTCAGTATAGATTTCCCAGCTAGATTTCAAGATTGGAAGGCAACTGATCCTTTGGATCTTTTTCAAGCTTCAGTAATTAAGGCAGAATCAAACCCAAAGGCTCACATACGTCAACATTTAAGTCGAGAAGCCCGTGGTTGTGATTGTTTGGTTTTATGGTTGGATTGTGATCGTGAAGGAGAGAATATTTGTTTTGAAGTTATTGAATGCACTGGATTTGGTGGCAATGATTATAGGAAAAAAGTGTATCGGGCAAGGTTTTCTTCCGTTACTGAAAAAGATATTCTGAAGGCTTTGGATAACCTTGTTGAACCTAATAGAAATGAGGCACTGGCTGTAGATGCTCGACAAGAGATAGATTTGAAAGTTGGAGTATCTTTTACACGATTTCAGACTACATTTTTTCAGGGAAAATATGGGAACCTTGATTCCAGACTCATCTCCTATGGGCCATGCCAAACTCCCACGCTTGGGTTTTGTGTACAGCGTCATTTGCAAATAACTACGTTTAAGCCAGAAAAATTTTGGTCTGTGTGCCCTTATATTATGCAAAATGGCTATGAACTTAATCTAGACTGGGAGCGTGGCAGGCTATTTGACTGTGATGTTGCTACAATGTTTCAAAAGCGAGTAATGGAAGATGGAATTGCAGAAGTAACACAAATATCAGAGAAGCAAGAAAGCAAAGTTCGACCTTCTGGACTAAATACAGTTAACCTTCTGAAGGTTGCTTCAAGCGCACTAGGATACGGACCTCAAATGGCAATGCAACTAGCTGAACGATTGTATACCCAAGGGTTCATCAGCTATCCACGTACAGAAAGTACGGCTTATCCTTCTTCATTTGACTTCAAAGGCACTCTACATTCCCTAGTGAAAAATCCAGAATGGGGTGATTATGTAAGGATGCTTCTATCCGATGGATACAGTAAGCCACGATCAGGAACTGATGTAGGTGATCATCCTCCTATTACTCCAATGTCTTTAGCAACTGAAGACATGGTGGGGAGAGATGCTTGGAGATTGTACCAATACGTGTGTCAACACTTCATTGGGTCTCTATCATCTGACTGCAAGTATATTAGGACGAAGATACAGTTTTCAATCGCTGGAGAAATATTCAATTGTACTGGGTCCAGTGTTATGGTAAAAGGATTCACCTCCATTATGCCATGGTTGGCAGTAAATGAAAAAAAGTTACCTCAGTTTCTGAAGGGACAGAAAATAGAAGTTGCAAAAGTGGATCTTTATCAGGGGAACACCTCGCCTCCTGATTATTTAAGTGAGAGTGAGTTGATTTCTCTCATGGAGAAGCATGGAATAGGCACGGATGCATCAATACCTGTACACATTAACAACATAGGCGAGCGCAACTATGTGCAGGTTCAAGCTGGGAGGAGGTTGGTTCCAACTAACTTGGGCATCACCTTAATCAGAGGTTATCAGTGTATTGATCCAGATCTCTGTTTACCAGATATTAGAAGTTTCATCGAGCAACAGATCACTTTTGTTGCCAAAGGTCAAGCAGATCATTTTAGTGTTGTGCAGAATGTACTGCAACAGTTCAAGCAAAAGTATAGCTACTTCGTTAAGAAGATTGATCATATGGATGCTCTGTTTGAAGCACAATTTTCTCCTCTTGCGGAGTCGGGACGTGCTTTGAGCAAATGTGGCAAATGCCTACGTTATATGAAGTTTATTTCTTCCCAACCACAGCGCCTGTACTGTGGTACATGTGAGGAGGTTTATTATCTTCCTCAAAGGGGAGCAATAAAGCTGTACAAGGAACTTACATGCCCTTTGGATAACTTTGAGCTCTTGATTTTTTCCTTACCTGGTCCAGAAGGTAAGTCATTTCCTCTTTGCCCATACTGCTACAATAGTCCTCCATTCGAGGGTATCGACACATTATATGGTGCTGCTAAAACCAACCCGAGTTCTGGAGCATCGAGCAAGGGAATGGGCATGCCATGCTTCCTGTGCCCGCACCCAACATGTCGACATTCTTTAATAACCCAAGGAGTTTGCGCTTGCCCAGAATGTAGCGGGACACTTGTGCTAGATCCAGTGGGTGCACCCAACTGGAAACTCAACTGCAACAAATGCAATTGTCTTGTCTTCCTTCCTCAGGGTGCTCATAGGATTGCCACCACAAACGAGAAGTGTGCTGAATGTGACTCTACAATTATAGAAGTGGACTTCAACAAGAAAACTACTCCATTGGAGGGTGGAGCTACATTGTTTGTTGGGTGCATTCTTTGCGATGAATTTCTCCATTCACTTCTGGAGATGAAGCATGGAAAATCATTTTTCAGAGGGAGAGGTTCAAGAGGAAGAGGAAGGGGACGGGGACGGGGACGGGGAAGGGGAAGAGGACGTAGTTCTGGGAAACTGATGGACCCGAAAATGAGTTTCCGAGATTTCTGA 2607 42.92 MVASSVLMVAEKPSIALSIASALSHGQMSTRKGSTEVHEFDGRFLGHHAHYKVTSVIGHVFSIDFPARFQDWKATDPLDLFQASVIKAESNPKAHIRQHLSREARGCDCLVLWLDCDREGENICFEVIECTGFGGNDYRKKVYRARFSSVTEKDILKALDNLVEPNRNEALAVDARQEIDLKVGVSFTRFQTTFFQGKYGNLDSRLISYGPCQTPTLGFCVQRHLQITTFKPEKFWSVCPYIMQNGYELNLDWERGRLFDCDVATMFQKRVMEDGIAEVTQISEKQESKVRPSGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFKGTLHSLVKNPEWGDYVRMLLSDGYSKPRSGTDVGDHPPITPMSLATEDMVGRDAWRLYQYVCQHFIGSLSSDCKYIRTKIQFSIAGEIFNCTGSSVMVKGFTSIMPWLAVNEKKLPQFLKGQKIEVAKVDLYQGNTSPPDYLSESELISLMEKHGIGTDASIPVHINNIGERNYVQVQAGRRLVPTNLGITLIRGYQCIDPDLCLPDIRSFIEQQITFVAKGQADHFSVVQNVLQQFKQKYSYFVKKIDHMDALFEAQFSPLAESGRALSKCGKCLRYMKFISSQPQRLYCGTCEEVYYLPQRGAIKLYKELTCPLDNFELLIFSLPGPEGKSFPLCPYCYNSPPFEGIDTLYGAAKTNPSSGASSKGMGMPCFLCPHPTCRHSLITQGVCACPECSGTLVLDPVGAPNWKLNCNKCNCLVFLPQGAHRIATTNEKCAECDSTIIEVDFNKKTTPLEGGATLFVGCILCDEFLHSLLEMKHGKSFFRGRGSRGRGRGRGRGRGRGRGRSSGKLMDPKMSFRDF 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10370896 10390013 - Cp4.1LG03g12320.1 Cpe03g01281 466998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01281 868 MobiDBLite consensus disorder prediction 833 852 - -
Cpe03g01281 868 PRINTS Prokaryotic DNA topoisomerase I signature 110 123 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cpe03g01281 868 PRINTS Prokaryotic DNA topoisomerase I signature 207 225 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cpe03g01281 868 PRINTS Prokaryotic DNA topoisomerase I signature 325 334 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cpe03g01281 868 PRINTS Prokaryotic DNA topoisomerase I signature 402 418 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cpe03g01281 868 PRINTS Prokaryotic DNA topoisomerase I signature 500 514 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cpe03g01281 868 ProSiteProfiles Toprim domain profile. 5 148 IPR006171 -
Cpe03g01281 868 Gene3D Topoisomerase I, domain 2 172 586 IPR013824 -
Cpe03g01281 868 MobiDBLite consensus disorder prediction 853 868 - -
Cpe03g01281 868 Gene3D Topoisomerase I, domain 3 231 484 IPR013825 -
Cpe03g01281 868 Gene3D - 1 165 - -
Cpe03g01281 868 PANTHER PROKARYOTIC DNA TOPOISOMERASE 5 845 IPR000380 GO:0003677|GO:0003917|GO:0006265
Cpe03g01281 868 MobiDBLite consensus disorder prediction 833 868 - -
Cpe03g01281 868 CDD TOP1Ac 168 586 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cpe03g01281 868 CDD TOPRIM_TopoIA_TopoIII 6 162 IPR034144 -
Cpe03g01281 868 SUPERFAMILY Prokaryotic type I DNA topoisomerase 6 590 IPR023405 -
Cpe03g01281 868 SMART topIaneu2 283 538 IPR003602 GO:0003677|GO:0003916|GO:0006265
Cpe03g01281 868 PANTHER DNA TOPOISOMERASE 3-BETA-1 5 845 - -
Cpe03g01281 868 Pfam DNA topoisomerase 165 575 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cpe03g01281 868 SMART topIban2 141 237 IPR003601 GO:0003677|GO:0003916|GO:0006265
Cpe03g01281 868 Pfam Toprim domain 6 149 IPR006171 -
Cpe03g01281 868 Gene3D Topoisomerase I, domain 4 291 416 IPR013826 -
Cpe03g01281 868 SMART toprim5 5 136 IPR006171 -
Cpe03g01281 868 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 320 334 IPR023406 GO:0003917
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01281 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] - csv:101216022 1627.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00405 Cpe-Chr3:2234342 Cpe03g01281 Cpe-Chr3:10370896 3.74E-109 dispersed
Cpe03g01281 Cpe-Chr3:10370896 Cpe06g00401 Cpe-Chr6:2271592 3.49E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1068 . . . . . . . . . . . Cma14g01522 . Car14g01348 . . Cpe03g01281 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma06g01402 . . Cmo14g01558 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007510 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 5 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01281 Cpe_Chr03 FPKM 229.567337 262.108765 868.642578 841.433411 125.82515 132.295792 121.390854 766.18988 814.873169 779.554321