Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01282 ATGGAGAACGAGTTCTTTATGAACGATGGATGCGGTTTTTCTGGGATGGAAATTCAACCTAATGAGTTGAATTCGAGTGGGTTGTTTACTTCCAATTGGGAGAATTCGATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGTTCAATTGTGTCTTCTCCGGTGAATTCTCACGCTGGAAATGTTATCGGTGGTGGCGGTGGCGGTGGCGGTGGCGGTGGAGGTGGAGACAACTTGATGATGCGAGAATTGATCGGAAGGCTTGGGAGTATTTGCAATTCTGGTGAGATTTCGCCTCATTCTTACATTGGTGGAACGAACAATAACAGTACGAACACTTCTTGTTACAATACGCCTTTGAATTCTCCTCCCAAGCTTAATTTGTCTTCGATCGGAGGGAATTTGATTCCCCTTCATCAAAATCTGGCTCCATTTTCGGCTGATCCTGGGTTTACTGAGAGGGCTGCGAGATTTTCTTGCTTTGGGAACAGGAATCTTGCGGGCTTGAATGGCCACTTGAGTTCTAATGAAACCCTAGAATTGGGAGCTGGGATGGAATCTGGAAAGCTATCCAGAGTTTCAAGTAACAAATCCTTCAACATTGGTGGAATTGGATCTCAAATGGGGGTTCAAGAAGGCGAGCAAAGCCCAATCCAGAAGGGGAATTCCATGAGAATCCCTAACAAGAAGGTACTGAACAGGTTTTCGAGGTCTTCGACCCCTGAAAACACCGGCGATTCACCGGAGGGATCGTCGGTTTCCGAGCAGATTACAGGTGGGGAATTGGGTTTCAAAGGTAAACCAGAAATCAACACTAGGAAAAGGAAATCAATTCTCACTGGACAAGCAAAAGATTTGAAGGTTGCAGGAGAGAAACATGAATCAAATGGAAAGAAAATCAAACCAGATGAAGCTTCTAAGAAGGAGATTGATGCTGCAAAAGGGAAGGCAGAGGCCAAAGATGGCTCAAAAGCTTTAGGAGTAGCAAATCCTAAGCAAAAGAATGACAATTCAAAGCCTCCAGAGCCTCCGAAGGATTATATCCATGTCAGAGCTAGAAGGGGTCAAGCAACAGATAGCCACAGTTTGGCTGAAAGAGTCCGACGAGAGAAAATCAGCAAACGGATGAAGTTTCTTCAAGATCTCGTCCCTAGTTGCAATAAGGTAACTGGGAAGGCTGTCATGCTTGATGAAATCATAAACTATGTTCAGTCTTTGCAGCGCCAAGTTGAGTTTCTTTCAATGAAATTGACCACTGTCAATCCAAGGATGGATTTGAACATGGAGACCCTTTTGCCAAAGGATATCTTCAAAGGTCCCGGTTCGTCGTCGCTAACGGTTTACCCTATGGATTCATCCATGCCCGCTTTTGCATATGACTATCAATCTATGCACATGCCTCCTCTTCATAGTAGCATTTCTATTGGGACAGAGAAGCAATTCTCAGTTGCCTCATCAAGTGATCAGCAAAGAAATCTAAGCGCGCAAATACCGAGTGGATACAACGAAGTCGGGAACGGAATCCAAATTTCAAAGTTCTGGGAGGATGAACTCCACACCGTAGTTCAAATGGGTTATGGACAAAACCAGCTGCAGAGTTCTAATGGCTCTATGGCTGCAGATGAGATGAAAAGTGAACGGTAA 1644 44.59 MENEFFMNDGCGFSGMEIQPNELNSSGLFTSNWENSMDQSDLFESTLSSIVSSPVNSHAGNVIGGGGGGGGGGGGGDNLMMRELIGRLGSICNSGEISPHSYIGGTNNNSTNTSCYNTPLNSPPKLNLSSIGGNLIPLHQNLAPFSADPGFTERAARFSCFGNRNLAGLNGHLSSNETLELGAGMESGKLSRVSSNKSFNIGGIGSQMGVQEGEQSPIQKGNSMRIPNKKVLNRFSRSSTPENTGDSPEGSSVSEQITGGELGFKGKPEINTRKRKSILTGQAKDLKVAGEKHESNGKKIKPDEASKKEIDAAKGKAEAKDGSKALGVANPKQKNDNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPSCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLTTVNPRMDLNMETLLPKDIFKGPGSSSLTVYPMDSSMPAFAYDYQSMHMPPLHSSISIGTEKQFSVASSSDQQRNLSAQIPSGYNEVGNGIQISKFWEDELHTVVQMGYGQNQLQSSNGSMAADEMKSER 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10393240 10396169 + Cp4.1LG03g12280.1 Cpe03g01282 466999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01282 547 MobiDBLite consensus disorder prediction 203 347 - -
Cpe03g01282 547 Pfam Helix-loop-helix DNA-binding domain 360 407 IPR011598 GO:0046983
Cpe03g01282 547 SMART finulus 362 412 IPR011598 GO:0046983
Cpe03g01282 547 MobiDBLite consensus disorder prediction 267 321 - -
Cpe03g01282 547 PANTHER TRANSCRIPTION FACTOR BHLH78-LIKE ISOFORM X1 35 533 - -
Cpe03g01282 547 Gene3D - 353 427 IPR036638 GO:0046983
Cpe03g01282 547 MobiDBLite consensus disorder prediction 232 258 - -
Cpe03g01282 547 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 35 533 IPR024097 GO:0006355
Cpe03g01282 547 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 354 425 IPR036638 GO:0046983
Cpe03g01282 547 CDD bHLH_AtBPE_like 346 431 - -
Cpe03g01282 547 MobiDBLite consensus disorder prediction 203 223 - -
Cpe03g01282 547 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 356 406 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01282 Cpe-Chr3:10393240 Cpe12g01104 Cpe-Chr12:9140287 1.21E-75 dispersed
Cpe09g00944 Cpe-Chr9:8454037 Cpe03g01282 Cpe-Chr3:10393240 4.51E-25 dispersed
Cpe12g01053 Cpe-Chr12:8773170 Cpe03g01282 Cpe-Chr3:10393240 2.47E-22 dispersed
Cpe16g00243 Cpe-Chr16:4493168 Cpe03g01282 Cpe-Chr3:10393240 1.01E-36 dispersed
Cpe03g01282 Cpe-Chr3:10393240 Cpe08g00116 Cpe-Chr8:747635 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49247 PF00010 HLH 1.50E-05 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01282 - - cmax:111479362 997.653