Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01293 ATGGCCAGAGCTCCCATTCACACTCCGGCCAACTTTCTGACCTCTCGAAGTCTCGAACCGTGCTACTTGAGATGCTATGGCTGCCTCCGCCCGCCATTTTTGAGCCAGACGCTACGGCCAGTTCCCGCGAGCAAGGTGGTGATTGTTCGTGGTTGTGTAATCGCCGGTTACGCTCGGAAGTCGGTGGATTCTGATGGATTTGATAAGCTCACTGATGATAATGACTTCACCGTTTATTCGTCGGACGAATTGCGTTACGATGGAGATGTGACAGTTGATAATGAAGTTATTAAGAATTCAGGAACACCGAGAAGGATATCAATTGGAAGACTTGGAAGATTGAAATCTCAGAAAGTTAAGGCAATTGTGATGAAAGGTTCTAGGACAAAGGAAGAAGTAAAAGATGATGTTCGTGTACCGACTACTGGAAATGGTTCACTGCATATATCCGATCGTCTGCACTCTAAAGTTAAAACTCCAGGAGAAAAGAAGAAGGTAAATACCTTAAGAAATGTAGAAAGATTTTCAAGATCATCTGAACTGCAAGATAAAGATCGACATCACAGAACTGCCCCCGGTTTATCAAGATCCGAGCAATCAGTCCCGGCAGCTTCTGCCACTTACTTCAGAGGATGGGGCTCTAGAGGGCCCTACGATTCGGAGTATGAATTAACCCAACCTAAACAACAGAAGTTTTCCTCAGAGAAGGGCTTTTACAGCCGAAAGTCATTTAAAGATCTTGGGTGCACTGAATATATGATTGAATCATTGAGGAGGCAGAATTTCCTACGGCCTTCACAGATTCAGGCCAAGGCATTTGCATCAGTTATTGAAGGAAAAAGTTGTATCATTTCTGATCAAAGTGGATCTGGTAAGACATTAGCATATCTTGCACCATTAATCCAGCGTCTGAGGCAGGAAGAACTTCAAGGACTTCAAAAGTCTTCTCCACAAAGTCCCCAAATTGTTATCATTGTGCCGACTGCAGAATTGGCTTCTCAGGTCTTAAGTAATTGCCGATCCATTTCAAAATTTGGGGTGCCATTTAGGTCAATGGTTGTGACAGGCGGTTTCCGGCAGAAAACTCAACTTGATAATCTACAAGAAGGTGTTGATGTTCTAATAGCAACTCCTGGTCGTTTGATGCTTCTAATAAATGAAGGCTTCTTGCAGTTATCAAATCTAAGATGA 1191 43.32 MARAPIHTPANFLTSRSLEPCYLRCYGCLRPPFLSQTLRPVPASKVVIVRGCVIAGYARKSVDSDGFDKLTDDNDFTVYSSDELRYDGDVTVDNEVIKNSGTPRRISIGRLGRLKSQKVKAIVMKGSRTKEEVKDDVRVPTTGNGSLHISDRLHSKVKTPGEKKKVNTLRNVERFSRSSELQDKDRHHRTAPGLSRSEQSVPAASATYFRGWGSRGPYDSEYELTQPKQQKFSSEKGFYSRKSFKDLGCTEYMIESLRRQNFLRPSQIQAKAFASVIEGKSCIISDQSGSGKTLAYLAPLIQRLRQEELQGLQKSSPQSPQIVIIVPTAELASQVLSNCRSISKFGVPFRSMVVTGGFRQKTQLDNLQEGVDVLIATPGRLMLLINEGFLQLSNLR 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10523808 10530348 + Cp4.1LG03g12180.1 Cpe03g01293 467010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01293 396 CDD DEADc 253 396 - -
Cpe03g01293 396 Pfam DEAD/DEAH box helicase 267 396 IPR011545 GO:0003676|GO:0005524
Cpe03g01293 396 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 98 396 - -
Cpe03g01293 396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 396 IPR027417 -
Cpe03g01293 396 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 242 270 IPR014014 GO:0003724
Cpe03g01293 396 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 98 396 - -
Cpe03g01293 396 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 273 396 IPR014001 -
Cpe03g01293 396 MobiDBLite consensus disorder prediction 175 193 - -
Cpe03g01293 396 SMART ultradead3 261 396 IPR014001 -
Cpe03g01293 396 MobiDBLite consensus disorder prediction 175 202 - -
Cpe03g01293 396 Gene3D - 219 396 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01293 K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1 [EC:3.6.4.13] - csv:101214337 586.645
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01293 Cpe-Chr3:10523808 Cpe02g01721 Cpe-Chr2:14093445 2.31E-20 dispersed
Cpe03g01293 Cpe-Chr3:10523808 Cpe06g00913 Cpe-Chr6:6347399 1.85E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g288 . . . . . Bpe14g01079 . . . . . Cma14g01547 . Car14g01365 Sed02g1093 . Cpe03g01293 Bhi01g01151 Tan10g1142 Cmetu06g0925 . Hepe05g1330 . Lcy11g1291 . . . . . . . . . . . Lsi05g01373 . . Cme06g00846 Blo02g00460 . . Bda13g00235 . . . . . . Cmo14g01583 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011458 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01293 Cpe_Chr03 FPKM 4.582701 5.626893 0.540183 1.417477 5.083098 4.644016 5.622977 2.413757 2.4687 2.661164