Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01308 ATGGCGTCGGAGTCTTCTACCCAGGCCTACGGCGAGCCCTCGTATTGGGACAATCGCTATTCCAACGAATCTGGCCCCTTTGATTGGTACCAGAAGTATCACTCCTTAGCGCCACTGATCAATCTCTATGTCTCTCGCCATCATCGCATCCTCGCCGTTGGATGCGGCAACTCAGCATTTAGCGAAGGCATGGTCGATGATGGCTATGAGGATGTGATCAATGTTGATATATCCTCTGTTGTGATCGAAGCAATGCAGAAGAAGTACTGTAATTGTCCGCAGCTGAAATGGACCCTAGACTCTCTATTGTTGATGACAAAATATAGGGTCCTCAAGGAGAATGGAGTTTATATTTTGGTTACATATGGAGCTCCCTCGTATCGACTAAGTCTACTGAGACGTACTTTCTCATTGATAAAGCTTCATGTCATAGAGAAACTTATTTCAGAGAAAAGAACTGACCCTCCAAAATGGGACCTGTTGAAACCTGTTCCATGTGATAACGACGTAAGGGTACTCGATACCGTGCTCGGGCAGAATCCTGATGTCCACTATATATACATCTGTACTAAGGATAGTTCTTTGAAGCCGGACCAAAAGCAGGATCTTGCTGTTGAGTGA 621 45.41 MASESSTQAYGEPSYWDNRYSNESGPFDWYQKYHSLAPLINLYVSRHHRILAVGCGNSAFSEGMVDDGYEDVINVDISSVVIEAMQKKYCNCPQLKWTLDSLLLMTKYRVLKENGVYILVTYGAPSYRLSLLRRTFSLIKLHVIEKLISEKRTDPPKWDLLKPVPCDNDVRVLDTVLGQNPDVHYIYICTKDSSLKPDQKQDLAVE 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10594682 10598585 + Cp4.1LG03g12020.1 Cpe03g01308 467025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01308 206 Coils Coil 205 206 - -
Cpe03g01308 206 Gene3D Vaccinia Virus protein VP39 8 106 IPR029063 -
Cpe03g01308 206 CDD AdoMet_MTases 49 99 - -
Cpe03g01308 206 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 106 191 - -
Cpe03g01308 206 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 9 146 IPR029063 -
Cpe03g01308 206 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 106 191 - -
Cpe03g01308 206 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 5 97 - -
Cpe03g01308 206 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 5 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01308 - - - csv:101203026 351.288
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01308 Cpe12g00279 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01308 Cpe-Chr3:10594682 Cpe17g00711 Cpe-Chr17:5662878 1.13E-26 dispersed
Cpe03g01308 Cpe-Chr3:10594682 Cpe12g00846 Cpe-Chr12:7492842 3.85E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g246 . . . . . . . . . . . Cma14g01563 . Car14g01380 Sed02g1116 . Cpe03g01308 Bhi01g01121 Tan10g1110 Cmetu06g2692 . Hepe05g1350 . Lcy11g1311 . . . . . . . . . . . Lsi05g01392 . . Cme06g00825 . . . . . . . . . . Cmo14g01599 . . Car08g01105 . Cpe12g00279 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007366 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01308 Cpe_Chr03 FPKM 4.093117 3.04024 9.82795 8.326196 2.016237 1.524902 1.999127 8.93079 8.592302 9.961149