Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01309 ATGGCTGAGAGCAGGAGATATGTTCCCATTCAGCATTTAGATCTAGTACAAATACTACAAGAAGCACAAAACAGGTGGCTTCGGCCAGCTGAAATATGTGAAATTCTTCGAAATTACCAAAAGTTTCAATTAGCACCGGATCCTCCAGTTCAGCCTCCAGCTGGATCCTTGTTCCTTTTTGATCGGAAAGCACTTAGATATTTTCGTAAAGATGGTCATAAATGGAGGAAGAAGAAAGATGGAAAAACTGTCAAAGAAGCCCATGAAAAGTTGAAGAGTGGAAGTGTGGATGTTCTGCATTGTTACTATGCACATGGTGAGGACAATGACAACTTCCAGCGAAGAAGTTATTGGATGCTTGATGAGCAATTAGAGCATATTGTCCTTGTGCATTACAGAGAAGTAAATGAGGGTTACAGGTCTGGCGTATCTCGTGTTTCAGTTGATCCAGGGTCATTGGCTGAAGGTTGTCAAGGTGGTTCAACACCCATCTTTATGCAGGAAACTTCACTTGTTGGCTCAGTTCATACTTCAAGTCCATTAAGTCCTATGCAAACAGTGCGTTCAGAAAATGGGGGTGTGGATTCTAGCGCTAGGAATGACTCTGGAATCTCTTCTGATGTTCATCATGTGTTTAAATCCAGCATGCTGCCTGCATCTTTGCCTGCAGGATCGTCTGATTTATGTGGACAAGAAATCGTGATTATTCAATCTGCCATAACTGATTCCATTACACATAAGTTAATAGATGCTAGATTGGCTTCTAGTGGCTTAGTAAAAAATATGGTAAATAGTGGGCATGGCTTGATTGCTGATGCAGAAGTACCTGCCGCAAAAGCAGTTTCTCAGAGAATTGTTCAGGTGGTAGACGACTCGTTTGTTCAGGTAGAAAAGACATCCAAATATGATTTGAACCATGAAGGTTTTGGAGAACTCAAAAAACTTGACAGTTTTGGCAGATGGATGGATAAGGAAATTGGAAGAGATTGTGATGATTCTTTGATGACTTTGGACTCTGGTAATTACTGGTGTGCACTGGATGCTGGAAATGATGAGAAGGAAGTATCCAGTTTATCGCATCACATGCAGCTGGATATCGATTCACTGGGGCCTTCACTTTCCCAAGATCAGTTATTCAGTATTTCCGATTTTTCCCCAGATTGGGCATATTCTGGAAATGTAACAAAGGTCCTAATAGTTGGCTCGTTTTTGGGAAGCAAAAAACTTCCTGTAGAAACGCAGTGGGGATGCATGTTTGGGGAAGTTGAGGTTTCTGCAGAAATTCTGTCAAACAGTGTACTTCGATGCCAAACTCCCCTGCATGCTCCAGGGCGTATTCCCTTCTATGTGACATGCTGTAATAGGCTAGCCTGCAGTGAGGTGAGAGAATTTGAGTTTCGTGAAAAGCCACCAACCCTTTCTGTACCTAATGCTATCAAGTGTGCATCAGAAGATGAATTGCGGTTTCAAATGCGTCTGACAAGGCTGTTGAATTTATGTTTAGAGGAAAAGTGGTTGGATTGCCCTATTAAGAACTGTGAGAAATGCAAAATCGTAGGTTTGATGAAGTCATCCAGAAGTGATATTGCAAAATGGAGAATGATGGAAGGGATTTCTATTCCATTAATAAGTGATGGAATGGACCCTAGGGATTTTATGATCCAAACTTTGCTGGTGGACAAACTTTGTGAGTGGTTAGCATGCAAGGTTCATGAAGGAACTATGGGAACGCCTGTTTTGGATGAAGAGGGCCTAGGCGTCATACATTTGGCAGCTGCACTTGGCTATGCATGGACCATAGGACCGATAATCGCTTCTGGGGTCAGTCCGAACTTCAGAGATTCGAAGGGAAGGACAGCTCTTCACTGGGCGTCTTACTTTGGGAGGGAAGAAACCGTCGCTACACTGGTTAGGTTAGGTGTTTCTCCTGGCGCCGTGGATGATCCAACTTCAGGATTTCCAGGAGGACAAACTGCTGCTGATTTGGCATCAAGTCGAGGGCATAAGGGAATTGCTGGATATTTGGCTGAAGCTGATCTTACAGCTCATTTACGTTCTTTGACTGATGGTGAAAATCTTAAGGACAACGTAAAAGAAAATGTTAACGTTGATGAAACTATTCAGACTGCAGATGTCGTATCATCGCAGTTGGCGGAAGACGAACTCCTTTCGCTCAAGGGTTCTCTCGCTGCTGTCAGGAAGTCTGTTCACGCTGCTGCCTTAATTCATGCTGCTTTCCGTGCTCGTTCATTTCGTCATAAACAATTAATGGGAAGTGACAAGGAGATGATACATGAAGAATCAATTGACCTAGTGGCTCTCGGAATTTTAAACAAGGCTGAAAAAATTCACTATGAGGATTATCTCCACGTTGCAGCTGTGAGGATTCAACAAAATTATCGTGGCTGGAAGGGAAGAAAAGAGTTTTTGAAGATAAGAAACCGAATTGTAAAAATCCAGGCTCACGTGAGAGGATATCAAGTTCGTAAACTGTATAGAAAGGTCATATGGACAGTTAGCATTGTAGAAAAGGCAATTCTACGCTGGAGGCGGAAAAGAGTTGGTCTGCGAGGGTTCAAAGCCGAAGGGGCAACTGGCGAAGTTGCTTCCTCGCATTCACAGGTGGAGAAAAGTGATGACTATGAGTTTCTACGAATTGGGCGCCAGCTTAAATATGCTGATGTTGAAAAGGCGCTATCCAGAGTCAAGTCCATGGCTCGTTCTCCAGAGGCTCGCCATCAGTATATGAGATTAGTAACAAAGTTTCACATTTTTAAGATTAATGATGAAGAACCCAGTGGCTCAAATGAAGATGGAAGTTCCCAAGAAATCCAGAAGGAAGAGCAGAATTTGGCTTAA 2859 42.85 MAESRRYVPIQHLDLVQILQEAQNRWLRPAEICEILRNYQKFQLAPDPPVQPPAGSLFLFDRKALRYFRKDGHKWRKKKDGKTVKEAHEKLKSGSVDVLHCYYAHGEDNDNFQRRSYWMLDEQLEHIVLVHYREVNEGYRSGVSRVSVDPGSLAEGCQGGSTPIFMQETSLVGSVHTSSPLSPMQTVRSENGGVDSSARNDSGISSDVHHVFKSSMLPASLPAGSSDLCGQEIVIIQSAITDSITHKLIDARLASSGLVKNMVNSGHGLIADAEVPAAKAVSQRIVQVVDDSFVQVEKTSKYDLNHEGFGELKKLDSFGRWMDKEIGRDCDDSLMTLDSGNYWCALDAGNDEKEVSSLSHHMQLDIDSLGPSLSQDQLFSISDFSPDWAYSGNVTKVLIVGSFLGSKKLPVETQWGCMFGEVEVSAEILSNSVLRCQTPLHAPGRIPFYVTCCNRLACSEVREFEFREKPPTLSVPNAIKCASEDELRFQMRLTRLLNLCLEEKWLDCPIKNCEKCKIVGLMKSSRSDIAKWRMMEGISIPLISDGMDPRDFMIQTLLVDKLCEWLACKVHEGTMGTPVLDEEGLGVIHLAAALGYAWTIGPIIASGVSPNFRDSKGRTALHWASYFGREETVATLVRLGVSPGAVDDPTSGFPGGQTAADLASSRGHKGIAGYLAEADLTAHLRSLTDGENLKDNVKENVNVDETIQTADVVSSQLAEDELLSLKGSLAAVRKSVHAAALIHAAFRARSFRHKQLMGSDKEMIHEESIDLVALGILNKAEKIHYEDYLHVAAVRIQQNYRGWKGRKEFLKIRNRIVKIQAHVRGYQVRKLYRKVIWTVSIVEKAILRWRRKRVGLRGFKAEGATGEVASSHSQVEKSDDYEFLRIGRQLKYADVEKALSRVKSMARSPEARHQYMRLVTKFHIFKINDEEPSGSNEDGSSQEIQKEEQNLA 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10599106 10608887 + Cp4.1LG03g12030.1 Cpe03g01309 467026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01309 952 ProSiteProfiles Ankyrin repeat profile. 616 648 IPR002110 GO:0005515
Cpe03g01309 952 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 919 - -
Cpe03g01309 952 SUPERFAMILY Ankyrin repeat 579 678 IPR036770 -
Cpe03g01309 952 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Cpe03g01309 952 ProSiteProfiles Ankyrin repeat region circular profile. 616 648 - -
Cpe03g01309 952 SUPERFAMILY E set domains 381 467 IPR014756 -
Cpe03g01309 952 Gene3D - 556 689 IPR036770 -
Cpe03g01309 952 SMART iq_5 788 810 IPR000048 GO:0005515
Cpe03g01309 952 SMART iq_5 811 833 IPR000048 GO:0005515
Cpe03g01309 952 MobiDBLite consensus disorder prediction 929 952 - -
Cpe03g01309 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 781 839 IPR027417 -
Cpe03g01309 952 Gene3D - 787 836 - -
Cpe03g01309 952 Pfam IQ calmodulin-binding motif 815 833 IPR000048 GO:0005515
Cpe03g01309 952 Pfam IQ calmodulin-binding motif 791 809 IPR000048 GO:0005515
Cpe03g01309 952 MobiDBLite consensus disorder prediction 176 200 - -
Cpe03g01309 952 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Cpe03g01309 952 SMART ANK_2a 616 645 IPR002110 GO:0005515
Cpe03g01309 952 SMART ANK_2a 655 684 IPR002110 GO:0005515
Cpe03g01309 952 MobiDBLite consensus disorder prediction 934 952 - -
Cpe03g01309 952 ProSiteProfiles IQ motif profile. 812 840 IPR000048 GO:0005515
Cpe03g01309 952 Gene3D Immunoglobulins 374 472 IPR013783 -
Cpe03g01309 952 ProSiteProfiles IQ motif profile. 789 818 IPR000048 GO:0005515
Cpe03g01309 952 Pfam IPT/TIG domain 380 459 IPR002909 -
Cpe03g01309 952 SMART CG_1_2 18 136 IPR005559 GO:0003677
Cpe03g01309 952 Pfam Ankyrin repeats (many copies) 617 675 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01309 K21596 CAMTA; calmodulin-binding transcription activator - csv:101219268 1499.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01309 Cpe-Chr3:10599106 Cpe04g00378 Cpe-Chr4:4432433 4.72E-61 dispersed
Cpe03g01309 Cpe-Chr3:10599106 Cpe15g00228 Cpe-Chr15:2067654 4.91E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g245 . . . . . . . . Cmo08g01236 Cmo17g00349 . Cma14g01565 . Car14g01381 . . Cpe03g01309 . . . . . . . . . . . . . . Cone14ag0685 Cone15ag0697 . . . . Chy11g01557 . . . . . . . . . . . Cmo14g01600 Cma08g01266 Cma17g00358 . Car17g00331 . . . . . . . . . . . . . . . . . . . Cme11g02068
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007961 0 8 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 3 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49248 PF03859 CG-1 4.40E-49 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01309 Cpe_Chr03 FPKM 7.467033 9.701149 62.118271 61.87162 281.048431 288.50238 278.347504 58.448715 61.041912 57.513821