Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01312 ATGGAAACTGGAGAGTCTGCTCCCCCTTCTCTTGGTCCTCGCTATGCACCGGACGACCCTACTCTTCCCAAACCCTGGAAGGGATTGATTGATGGGAGCACTGGACTGTTATACTACTGGAACCCTGAAACCAACGTAACTCAGTATGAAAAACCGGTCTCTTTGCCACCACCATTGCCGCTCGGTCCTCATCCTGGCGTCTCTTCTTCCAAGCCTACTTCAGTTTCGGAGGCTCATTCAATGCCATCGAATGGTGCATTAACACCGCATGTACAGAAAAATCATCATGTCCCTCAACAAGAAGGCCAATCAAATAGCCAACTTTCTCAACAACCTGGACATCTGATGTCACAACAGCACAGTTCTGTTGCCGGTCAGGCAACTGTTAATCACCATCCTGGCTTGCAAATGGCACCAGATGGGCGACAAAATAGCTCACAATCGAACCAGGTCATGCAGCAACAGGGGCTGTTTGCAATGTCGTCACCGCATCTTGGCCAGCAGCAGGTCATGCATCAAGGTCAGAAAATGGCACATGCAAATCCACAAATGTCTCAGCATCCAAATCAGCAACCCCCGCAGAATCCAGGACAACCCTTACAGAATCCAGGACAACAAATACCACAACCATCAATCCAGCATTTAGGACAACCAAGCATGCAAAATCAAACGCCATTAGTTGGGCAGCCTCAAGGTCCGCAACCACAATATGGTCAGCAGCAGCTTCAGTATATCGGCTACCAGCAAAGTGTGCATCCAAGTGTGCAGCACAATTTGCAGCAGCAAGTTCAACAAAGCCCTTTAGGTCAACCATTTGGCAATCACCTTGAGCAGAAGTCAGCTTTTCTGAAGAGAGAGGAGGATAATATCCAGTCAGGAAACCAAGTTGGCTTTTCTTCTTCCCAGTTTGAACAAAGTGGTGGTACCTCATCTATTCATAACCTTCATCCTGGAACCAATTCTTCTCAAATGCAACAATTTGGTTCAGCATCAGACCAAGCACGACAATTTGGTGGCTCTCCAGGAAACATACAACAGCAGAATCCTGTGGTTCAATTGCAGCATGCAGGTACTGAATTGGCTCATCGCCAACATCATTCTAGATTCCAAGATCAGATGAGCCCAGCAGTGATGCAGGGGCAGCAAACTAGTGCTGAAAATTTGCCAGGTAGAGCTGGAAATGAATATTACTTTGGCAGGAATGAAGGGCCTGGCGTTGGTCCACTTCAACCAAGGCTTGCAGCAATACCAATGGCAAGGAGCCAGCAGGACACAAGGATGAGTGGTGTCTCATTTCCAACTGCAGCACCTGGCCATCCTAGTGGGACCAATTTTGCTGCTGGGCATTCACATAATATGTACAGCCATGGATCTGGTGGCCCACCATTGTCAAACAATGCTTTGATAGGCCCTCCTCATATTGGAGCTTCAGATGTCACTAATATGTCACCTGTTGAAGTTTATCGTCAACAGCATGAAGTAACTGCTACGGGTGATAACGTTCCATCTCCTTACATGACATTTGAGGCTACTGGCTTCCCTCCGGAGATACTGAGAGAGGCAAGTTTCACGATTGCTCGAACTTCTTTCAACTGGATATATTCTGCTGGTTTCTCTTCTCCAACGCCAATTCAAGCACAAACATGGCCAATTGCCCTGCAAGGTCGGGACATAGTTGCCATTGCTAAAACGGGGTCTGGAAAAACTTTGGGCTATTTGATTCCTGCCTTCATGCTTCTTAGGCAGTGCCGGAATAACCCTCAAAATGGACCAACGGTGTTGGTTTTGGCTCCTACTAGGGAACTTGCTACTCAAATACAAGATGAAGCTATTAAATTTGGGAGGTCTTCCAGGGTTTGTTGCACGTGTTTGTATGGTGGAGCCCCGAAAGGTCCTCAGCTAAAGGAGTTAGAACGTGGTGCTGATATTGTTGTGGCAACTCCTGGCCGGCTCAATGATATACTTGAAATGAAGATGATTAAGTTTAGGCAAATTTCACTTCTTGTGCTTGATGAAGCTGATCGAATGCTTGACATGGGATTTGAACCCCAAATTAGAAAGATTGTGAATGAAATACCACCACGCAGACAAACACTTATGTATACAGCAACCTGGCCCAAGGAAGTAAGAAAAATAGCGAATGATCTTCTAGTCAATTCTGTCCAGGTGAATATTGGCAGCGTTGATGAACTTGCTGCTAACAAGGCTATAACTCAGTATGTTGAAGTCGTTCCACAGATGGAAAAACAGAGACGGTTAGAACAGATTCTTAGGTCCCAAGAACGGGGATCTAAGGTAATAATTTTTTGTTCCACGAAGAGGCTATGTGATCAGCTTGCACGAAGTCTTGGTCGTGGTTTTGGGGCTGCTGCAATTCATGGAGACAAATCGCAGGGGGAGCGTGATTGGGTATTGAACCAGTTTCGTAGTGGAAAGTCCCCGATACTAGTTGCCACAGATGTTGCTGCCCGTGGGCTTGACATCAAAGATATAAGAGTGGTGATCAACTATGATTTTCCAACTGGAGTTGAGGACTATGTCCATCGAATTGGGAGAACTGGGAGGGCTGGAGCAACGGGAGTGGCATATACCTTCTTCACCGAACAGGATTGGAAATATGCTGCTGATTTGATTAAACTACTGGAGGGTGCGGATCAGCATGTGCCTCCTGAGTTGCGAGATATGGCTATGCGTGGTGGGCCAAGTTTTGGGAAGGATAGGGGTGGGATGGGTCGTTTTGATGCAGTTATGGGCGGCAGTCGCTGGGATTCAGGAGGCCGGGGTGGCATGAGAGATGGTGGGTTTGGTGGTCGCGGTGGTGCAAGGGATGGTGGGTTTGGTGGCCGTGGTGGGATGAGAGATGGTGGGTTTGGTGGTCGTGGTAACATGAGGGATGGTGCTGCTGGTGGACGAGGTGGGAGAGGTGATTTCTTTCCTACACGGGGTAGAGGACGGGGTTTCGGTGGCCCTGCTGGAGGTCATGTTGGTTGGGGAAGGGGTGATCGCGGCGGGCCACATGATAGGTTCAGTAGTGTGGATGGTCGTGGGCGTGGGCGTGGACAGAGTCGATTTGATAATAGAAACGACTTCAGTAATAGGAGTAGAGGCAGAAGTTACAGCCGCAGTCCTGAAAGAGTCCGAACATGGGGTTACAGTCGAAGTCGCAGTCGCAGTCGCAGTGGTAGCCGTAGTCGTAGTCGTAGCAGTAGAAGCTGGAGTAGAAGCCGTAGCAGGAGTAGGAGCAGAAGCAGGAGTCGGAGTTGGTCCCGCCGTCACAGCCGAAGCCGTAGTCGTAGCCGTAGCCACGATAATTACGGTCGTTCGCGTGAGCGGAACTTCGATAGGAAAGACGACCAACCTCCAGAATCAGTAACTGCAACGTCTCATGGCACACGAAAGAGCGGTTTTGACGATAGAGGTGATGCGGGGCAGGTTCCTCCTGTGGCGGCCAGCAGTAATATGGAGCCAGGGAAACCAGAAAATGGTGCAGAAGATACGAGCGATGGAACTGTTAATGCAGCAGCTCAAGTAATATGA 3537 48.8 METGESAPPSLGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPVSLPPPLPLGPHPGVSSSKPTSVSEAHSMPSNGALTPHVQKNHHVPQQEGQSNSQLSQQPGHLMSQQHSSVAGQATVNHHPGLQMAPDGRQNSSQSNQVMQQQGLFAMSSPHLGQQQVMHQGQKMAHANPQMSQHPNQQPPQNPGQPLQNPGQQIPQPSIQHLGQPSMQNQTPLVGQPQGPQPQYGQQQLQYIGYQQSVHPSVQHNLQQQVQQSPLGQPFGNHLEQKSAFLKREEDNIQSGNQVGFSSSQFEQSGGTSSIHNLHPGTNSSQMQQFGSASDQARQFGGSPGNIQQQNPVVQLQHAGTELAHRQHHSRFQDQMSPAVMQGQQTSAENLPGRAGNEYYFGRNEGPGVGPLQPRLAAIPMARSQQDTRMSGVSFPTAAPGHPSGTNFAAGHSHNMYSHGSGGPPLSNNALIGPPHIGASDVTNMSPVEVYRQQHEVTATGDNVPSPYMTFEATGFPPEILREASFTIARTSFNWIYSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFMLLRQCRNNPQNGPTVLVLAPTRELATQIQDEAIKFGRSSRVCCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIKFRQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIANDLLVNSVQVNIGSVDELAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARSLGRGFGAAAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFTEQDWKYAADLIKLLEGADQHVPPELRDMAMRGGPSFGKDRGGMGRFDAVMGGSRWDSGGRGGMRDGGFGGRGGARDGGFGGRGGMRDGGFGGRGNMRDGAAGGRGGRGDFFPTRGRGRGFGGPAGGHVGWGRGDRGGPHDRFSSVDGRGRGRGQSRFDNRNDFSNRSRGRSYSRSPERVRTWGYSRSRSRSRSGSRSRSRSSRSWSRSRSRSRSRSRSRSWSRRHSRSRSRSRSHDNYGRSRERNFDRKDDQPPESVTATSHGTRKSGFDDRGDAGQVPPVAASSNMEPGKPENGAEDTSDGTVNAAAQVI 1178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10621417 10627229 + Cp4.1LG03g12010.1 Cpe03g01312 467029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01312 1178 SMART helicmild6 773 857 IPR001650 -
Cpe03g01312 1178 MobiDBLite consensus disorder prediction 165 238 - -
Cpe03g01312 1178 CDD WW 23 53 IPR001202 GO:0005515
Cpe03g01312 1178 MobiDBLite consensus disorder prediction 67 129 - -
Cpe03g01312 1178 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 309 995 - -
Cpe03g01312 1178 Gene3D - 727 899 IPR027417 -
Cpe03g01312 1178 SUPERFAMILY WW domain 17 53 IPR036020 GO:0005515
Cpe03g01312 1178 MobiDBLite consensus disorder prediction 1 28 - -
Cpe03g01312 1178 SMART ultradead3 537 740 IPR014001 -
Cpe03g01312 1178 Pfam Helicase conserved C-terminal domain 749 857 IPR001650 -
Cpe03g01312 1178 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 752 896 IPR001650 -
Cpe03g01312 1178 Gene3D - 16 54 - -
Cpe03g01312 1178 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 309 995 - -
Cpe03g01312 1178 SMART ww_5 21 54 IPR001202 GO:0005515
Cpe03g01312 1178 MobiDBLite consensus disorder prediction 200 238 - -
Cpe03g01312 1178 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 549 723 IPR014001 -
Cpe03g01312 1178 Pfam DEAD/DEAH box helicase 542 712 IPR011545 GO:0003676|GO:0005524
Cpe03g01312 1178 MobiDBLite consensus disorder prediction 921 1178 - -
Cpe03g01312 1178 CDD SF2_C_DEAD 737 866 - -
Cpe03g01312 1178 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Cpe03g01312 1178 MobiDBLite consensus disorder prediction 1000 1042 - -
Cpe03g01312 1178 MobiDBLite consensus disorder prediction 1099 1122 - -
Cpe03g01312 1178 Pfam WW domain 22 52 IPR001202 GO:0005515
Cpe03g01312 1178 Gene3D - 480 726 IPR027417 -
Cpe03g01312 1178 MobiDBLite consensus disorder prediction 299 325 - -
Cpe03g01312 1178 MobiDBLite consensus disorder prediction 1058 1098 - -
Cpe03g01312 1178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 589 874 IPR027417 -
Cpe03g01312 1178 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Cpe03g01312 1178 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 669 677 IPR000629 -
Cpe03g01312 1178 MobiDBLite consensus disorder prediction 165 191 - -
Cpe03g01312 1178 MobiDBLite consensus disorder prediction 49 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01312 K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] - csv:101206347 1535.39
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01312 Cpe08g00137 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00574 Cpe-Chr3:3421535 Cpe03g01312 Cpe-Chr3:10621417 3.80E-19 dispersed
Cpe03g01312 Cpe-Chr3:10621417 Cpe04g00541 Cpe-Chr4:5852039 5.74E-18 dispersed
Cpe13g00059 Cpe-Chr13:473010 Cpe03g01312 Cpe-Chr3:10621417 1.54E-64 dispersed
Cpe14g00323 Cpe-Chr14:1915205 Cpe03g01312 Cpe-Chr3:10621417 2.40E-11 transposed
Cpe07g01076 Cpe-Chr7:9530519 Cpe03g01312 Cpe-Chr3:10621417 3.57E-13 transposed
Cpe03g01312 Cpe-Chr3:10621417 Cpe08g00137 Cpe-Chr8:882415 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g228 . . . . . . . . . . . Cma14g01570 . Car14g01384 . Cpe08g00137 Cpe03g01312 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo14g01604 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003909 1 2 1 1 1 1 2 1 2 1 2 2 2 1 2 2 1 2 2 2 1 2 1 1 2 1 1 2 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01312 Cpe_Chr03 FPKM 15.816712 17.401844 2.023354 1.958592 6.0335 6.205472 5.675533 2.850563 3.114904 2.883385