Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01314 ATGGAGGAACCGAAAGGCATTGTGAAGCACATTTTGCTGGCGAAATTCAAAGATGGAATCCCAGAGGAACAAATCGACCAACTCATCAAGGGATATGCCAATCTCGTCAATCTCATTGAACCTATGAAGGCTTTCCAGTGCGGCAAGGATGTTAGCATTGAAAATCTACACCAAGGTTTCACTCACGTCTTTGAATCCACATTTGAGAGTACAGAAGGCATAGCAGAATACGTATCTCATCCAGCGCATGTGGAATTCGCAAATTTGTTCCTTGCATCCTTGGACAAAGTTGTCGTCATCGACTACAAAGCGACCATAATTCATAGCTAA 330 43.03 MEEPKGIVKHILLAKFKDGIPEEQIDQLIKGYANLVNLIEPMKAFQCGKDVSIENLHQGFTHVFESTFESTEGIAEYVSHPAHVEFANLFLASLDKVVVIDYKATIIHS 109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10696668 10701389 + Cp4.1LG03g11930.1 Cpe03g01314 467031

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01314 109 Gene3D - 1 108 - -
Cpe03g01314 109 PANTHER - 1 108 IPR044662 -
Cpe03g01314 109 Pfam Stress responsive A/B Barrel Domain 8 103 IPR013097 -
Cpe03g01314 109 SMART Dabb_2 8 104 IPR013097 -
Cpe03g01314 109 ProSiteProfiles Stress-response A/B barrel domain profile. 8 102 IPR013097 -
Cpe03g01314 109 SUPERFAMILY Dimeric alpha+beta barrel 8 105 IPR011008 -
Cpe03g01314 109 PANTHER STRESS-RESPONSE A/B BARREL DOMAIN-CONTAINING PROTEIN HS1 1 108 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01314 - - - csv:101202790 195.282
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01314 Cpe-Chr3:10696668 Cpe16g00792 Cpe-Chr16:7765317 1.96E-19 dispersed
Cpe03g01314 Cpe-Chr3:10696668 Cpe05g00424 Cpe-Chr5:2418176 2.98E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g23 . . . . . . . . . . . Cma14g01573 . Car14g01386 Sed02g1121 . Cpe03g01314 Bhi01g01109 Tan10g1095 Cmetu06g2217 . Hepe05g1358 . Lcy11g1320 . . . . . . . . . . . . . . . . Blo07g00129 Bda11g00490 . . . . Bma06g01454 . . Cmo14g01606 . . . . . . . . . . . . . Cla05g00724 Cam05g0794 Cec05g0799 Cco05g0797 Clacu05g0783 . Cre05g0823 . . . .
Vvi5g215 . . . . . . . . . . . Cma14g01573 . Car14g01386 . . Cpe03g01314 Bhi01g01102 . . . . . . . . . . . . . . . . . Lsi05g01409 . . Cme06g00753 . . . . . . . . . . Cmo14g01606 . . . . . . . . . . . . . Cla05g00718 Cam05g0787 Cec05g0792 Cco05g0790 Clacu05g0777 Cmu05g0741 Cre05g0817 . Csa03g01537 Chy06g00774 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003452 1 2 1 1 1 3 1 2 3 1 3 3 1 1 1 1 2 0 1 2 1 1 1 1 1 2 1 2 1 5 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01314 Cpe_Chr03 FPKM 135.701019 145.434204 9.315817 9.834249 4.77002 4.637772 4.134314 58.28688 52.308556 53.955044