Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01319 ATGGACAAGAAGCTTGAAGACACAATGATGGGGTCTGAGAATTCTGCCGGAAAATACTCTCCGGTGGGGTTTTCCGATGACTTCTCGGCGACTAGCTTTGGTTCTTCTAATTCCTTTGACTTATTGGGGAGTGGAATTGATTTTTACAATCCTTTATCTTCCTTGTTTGATTTGGTTTCTACGACGGCGCCGCTGCTTTCCTCACCGGCCTCCACCGTGCCGGAGTCGTCGGAGGTTGTCAATGCTCCGCCCACTCCTAATTCTTCCTCCGTTTCTTCTTACTCCAATGACGCTGCCGCCATTGATGAAGTTGACAAGAACAACACCGAGAAGCCTTCTTCTTCTAATGTGTTGAAGCCAAAAAAGAAGAACCCGAAGAAGCAAAGAGAGCCGAGATTTGCTTTCATGACGAAGAGTGATATTGATCATCTCGACGATGGGTATCGGTGGCGAAAGTACGGTCAAAAAGCCGTGAAGAACAGTCCGTACCCTAGAAGCTATTACCGTTGTACTACGGTAGGGTGTGGTGTGAAGAAGAGAGTGGAGCGATTGTCCAACGACCATTCGACCGTCGTTACAACTTACGAAGGCAAACACACCCATCAAAGTCCAATAATGCCACGAGGTAGTATCAGAATCCTACCGGAATCCAATCTCGACGTTACTACCACCACCGGACTTTTATTCCAACCCAACACACCCCAACCCTTCATGTATAGCCCTCCACCGCCATTTCTAACAATCAACTCGTTGTCAACGAACCCACGTCCTCCTTCTTCCTTCCCGCCACCACCGCCACCGCCACCGCCACCGTCGTCTCAAGCTTCCGTGCTCCGAGACCACGGGCTTCTACAAGACTTGGTGCCATTGCAAATGAGGAAGGAACCAAAAGATGAACAAAATGGATGA 909 49.06 MDKKLEDTMMGSENSAGKYSPVGFSDDFSATSFGSSNSFDLLGSGIDFYNPLSSLFDLVSTTAPLLSSPASTVPESSEVVNAPPTPNSSSVSSYSNDAAAIDEVDKNNTEKPSSSNVLKPKKKNPKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERLSNDHSTVVTTYEGKHTHQSPIMPRGSIRILPESNLDVTTTTGLLFQPNTPQPFMYSPPPPFLTINSLSTNPRPPSSFPPPPPPPPPPSSQASVLRDHGLLQDLVPLQMRKEPKDEQNG 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10730902 10732156 - Cp4.1LG03g11900.1 Cpe03g01319 467036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01319 302 SMART WRKY_cls 144 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe03g01319 302 MobiDBLite consensus disorder prediction 67 133 - -
Cpe03g01319 302 MobiDBLite consensus disorder prediction 256 274 - -
Cpe03g01319 302 SUPERFAMILY WRKY DNA-binding domain 136 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe03g01319 302 MobiDBLite consensus disorder prediction 67 97 - -
Cpe03g01319 302 MobiDBLite consensus disorder prediction 1 21 - -
Cpe03g01319 302 ProSiteProfiles WRKY domain profile. 139 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe03g01319 302 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 63 288 IPR044810 GO:0003700
Cpe03g01319 302 MobiDBLite consensus disorder prediction 235 276 - -
Cpe03g01319 302 Gene3D WRKY domain 129 205 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe03g01319 302 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 63 288 - -
Cpe03g01319 302 Pfam WRKY DNA -binding domain 145 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01319 Cpe12g00331 CCT
Cpe03g01319 Cpe12g00331 ECH
Cpe03g01319 Cpe08g00144 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01532 Cpe-Chr2:13032545 Cpe03g01319 Cpe-Chr3:10730902 6.09E-26 dispersed
Cpe03g01319 Cpe-Chr3:10730902 Cpe12g00881 Cpe-Chr12:7677612 3.40E-46 dispersed
Cpe16g00728 Cpe-Chr16:7390912 Cpe03g01319 Cpe-Chr3:10730902 2.59E-39 dispersed
Cpe12g00331 Cpe-Chr12:2190645 Cpe03g01319 Cpe-Chr3:10730902 2.26E-67 wgd
Cpe17g00078 Cpe-Chr17:448267 Cpe03g01319 Cpe-Chr3:10730902 7.05E-48 wgd
Cpe03g01319 Cpe-Chr3:10730902 Cpe08g00144 Cpe-Chr8:939405 1.30E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49250 PF03106 WRKY 7.50E-25 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01319 - - cmos:111457825 518.079