Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01324 CTGTTTCTAAATGGATATCATTTTTGTCAACAACAATACTGTTTTGGGTATCCTATAGCTTTTACAGCTAATTTTGTGTTTGGGGATTCATTGGTAGAGGTTGGAAACAACAACTACATTCCATCACTCTCCCGGGCAAACTACGTGCCGAATGGCATCGATTTCGGATGGCCGACTGGTCGATTCACCAACGGGCGAACCATTGTTGATATAATAGGCAAGTTTGTGATCTACATTGCATTACTAAGATCAACAAAAGACAGCAAACAAGAGTTCAATGTCTATTATGTTTATGTTCCCATCTTACCAGGTCAGGAGCTGGGCTTCGAGACATTCACTCCCCCGTACTTGGCGCCTTCCTCGACTGGACCCGTGATTCTTCATGGCGTCAACTATGCTTCTGGTTCAGCTGGAATCTTCAATAACACAGGAAAAATCTTTGTAAGTTTCTGCAGTAACCAGTTAAGCATACAAGATATCATCGACATGATTGGCCTTCCTGCTGCCATGGATTTGCTTAGAACTTCCATATTCTCCATAACCATTGGCTCAAACGACTTCATTAATAACTACTTTACACCATATCCGAATCACTTGCAGAGACTCTACAATCTAGGAGCCAGAAACATCGTAGTGGTAAACGTCGGACCAATCGGATGCATTCCATATCAGAGAGATTCAAATCCTTCATTAGGAAGCAACTGTGCAAATTCCCCTAACCTAATGGCTCAGTTACTCAACAACCAATTGAGAGGTCTAATCACAGAGCTCGGAGCTCAATTTCAGAATTCTAATTTCCTCTATGCAAATGCGTATCACATCGTTCAAGATATAGTTCAAAATCACGCATCATACGGGTTTGAGAATGCCGACTCGGCGTGCTGCCACATCGCCGGACGGTACGGCGGTCTTTTTCCCTGTGGACCGCCGTCGAGAGTGTGCGTAGACAGGTCGAAGTACGTGTTTTGGGATTCATTTCATCCTTCTGAAGCTACGAACTCCATAATCGCCAGGCGGCTCATGGACGGCGACGCCAATGATATTTGGCCCATCAATATTCGAGAACTCGAGCGCTTTAAC 1080 44.35 LFLNGYHFCQQQYCFGYPIAFTANFVFGDSLVEVGNNNYIPSLSRANYVPNGIDFGWPTGRFTNGRTIVDIIGKFVIYIALLRSTKDSKQEFNVYYVYVPILPGQELGFETFTPPYLAPSSTGPVILHGVNYASGSAGIFNNTGKIFVSFCSNQLSIQDIIDMIGLPAAMDLLRTSIFSITIGSNDFINNYFTPYPNHLQRLYNLGARNIVVVNVGPIGCIPYQRDSNPSLGSNCANSPNLMAQLLNNQLRGLITELGAQFQNSNFLYANAYHIVQDIVQNHASYGFENADSACCHIAGRYGGLFPCGPPSRVCVDRSKYVFWDSFHPSEATNSIIARRLMDGDANDIWPINIRELERFN 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10772938 10775095 - Cp4.1LG03g11910.1 Cpe03g01324 467041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01324 360 Gene3D SGNH hydrolase 17 343 IPR036514 -
Cpe03g01324 360 CDD SGNH_plant_lipase_like 22 344 IPR035669 -
Cpe03g01324 360 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 104 357 - -
Cpe03g01324 360 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 19 74 - -
Cpe03g01324 360 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE SUPERFAMILY PROTEIN 19 74 - -
Cpe03g01324 360 Pfam GDSL-like Lipase/Acylhydrolase 25 339 IPR001087 GO:0016788
Cpe03g01324 360 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE SUPERFAMILY PROTEIN 104 357 - -
Cpe03g01324 360 SUPERFAMILY SGNH hydrolase 160 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01324 - - - cmos:111458001 555.058
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01324 Cpe-Chr3:10772938 Cpe16g00023 Cpe-Chr16:279089 8.73E-94 dispersed
Cpe03g01324 Cpe-Chr3:10772938 Cpe20g00486 Cpe-Chr20:2816016 1.96E-70 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g58 . . . . . . . . . . . Cma14g01587 . Car14g01397 . . Cpe03g01324 Bhi01g01094 . . . . . Lcy11g1334 . . . . . . . . . . Cone4ag0103 . . . Cme06g00793 . Blo07g00140 . . . Bpe13g00700 . Bma06g01464 . . Cmo14g01617 . . . . . . . . . . . . . Cla05g00710 . . Cco05g0778 Clacu05g0767 Cmu05g0733 Cre05g0807 . Csa03g01522 Chy06g00758 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014157 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 0 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01324 Cpe_Chr03 FPKM 12.176186 14.654435 13.518554 13.251308 6.002775 6.191299 5.535751 13.175129 11.94621 13.605424