Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01327 ATGATAGCCATAGATGAGGCTAGTTTTCGGGTTATTGCATACAGTGAGAACGCTAGGGAATTGCTCGGTTTAACTCCCCAATCCGTGCCGAGTCTTGAAAAGCCTGAGATCCTCACAATTGGGACTGATGTACGGAATTTGTTCACTTCCAACAGTGCAATTCTGCTCGAGAAGGCATTTGGGGCTCGAGAAATCACTTTGTTGAACCCTGTTTGGATTCATTCCAAGAATTCTGGTAAGCCTTTTTACGCAATTTTGCATAGGATTGATGTGGGAATTGTGATTGATTTGGAGCCTGCAAGAACGGAGGATCCTGCCCTTTCTATTGCTGGAGCAGTCCAATCGCAAAAACTTGCGAAACAACTGTTCAGGATTCAATCGTGTTACTGCAACTCACCCATAGCGCAGTACACAGCCGATGCTCGTCTTCACGCGGTGTTCGAGCAGTCAGGTGAGTCTGGGAAATCTTTTGACTACTCACAATCTATAAGAACTTCGACGCAATCTGTGCCGGAGCAGCAAATTACTGCTTATTTGTCGAAGATTCAAAGAGGCGGCCATATCCAGCCCTTTGGATGTATGATAGCCATAGATGAGGCTAGTTTTCGGGTTATTGCATACAGTGAGAACGCTAGGGAATTGCTCGGTTTAACTCCCCAATCCGTGCCGAGTCTTGAAAAGCCTGAGATCCTCACAATTGGGACTGATGTACGGAATTTGTTCACTTCCAACAGTGCAATTCTGCTCGAGAAGGCATTTGGGGCTCGAGAAATCACTTTGTTGAACCCTGTTTGGATTCATTCCAAGAATTCTGGTAAGCCTTTTTACGCAATTTTGCATAGGATTGATGTGGGAATTGTGATTGATTTGGAGCCTGCAAGAACGGAGGATCCTGCCCTTTCTATTGCTGGAGCAGTCCAATCGCAAAAACTTGCGGTACGTGCTATTTCTCAGTTACAATCACTCCCTGGTGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTTAGGGAGCTTACTGGATATGATAGGGTTATGGTGTATAAATTTCATGAGGATGAGCATGGTGAGGTTGTGGCTGAAAGCAAGAGGGCTGACTTAGAGCCATACATTGGATTGCATTATCCTTCTACTGATATTCCTCAGGCATCAAGGTTTTTGTTTAAGCAAAACCGTGTTAGGATGATCGTTGATTGCAATGCCTCTCCAGTTCGTAAAATGGTTTCCAGTAATCGAGCGACGCATTGGCATCAACAACAAGCACAGTCCTCGAACACGAATACCAGCAATTTCCGATCTCACCGTACAGATTCTATCAACAAAGCCATAGCGCAGTACACAGCCGATGCTCGTCTTCACGCGGTGTTCGAGCAGTCAGGTGAGTCTGGGAAATCTTTTGACTACTCACAATCTATAAGAACTTCGACGCAATCTGTGCCGGAGCAGCAAATTACTGCTTATTTGTCGAAGATTCAAAGAGGCGGCCATATCCAGCCCTTTGGATGTATGATAGCCATAGATGAGGCTAGTTTTCGGGTTATTGCATACAGTGAGAACGCTAGGGAATTGCTCGGTTTAACTCCCCAATCCGTGCCGAGTCTTGAAAAGCCTGAGATCCTCACAATTGGGACTGATGTACGGAATTTGTTCACTTCCAACAGTGCAATTCTGCTCGAGAAGGCATTTGGGGCTCGAGAAATCACTTTGTTGAACCCTGTTTGGATTCATTCCAAGAATTCTGGTAAGCCTTTTTACGCAATTTTGCATAGGATTGATGTGGGAATTGTGATTGATTTGGAGCCTGCAAGAACGGAGGATCCTGCCCTTTCTATTGCTGGAGCAGTCCAATCGCAAAAACTTGCGGTACGTGCTATTTCTCAGTTACAATCACTCCCTGGTGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTTAGGGAGCTTACTGGATATGATAGGGTTATGGTGTATAAATTTCATGAGGATGAGCATGGTGAGGTTGTGGCTGAAAGCAAGAGGGCTGACTTAGAGCCATACATTGGATTGCATTATCCTTCTACTGATATTCCTCAGGCATCAAGGTTTTTGTTTAAGCAAAACCGTGTTAGGATGATCGTTGATTGCAATGCCTCTCCAGTTCGTGTAATTCAGGAGCCAGGGCTTATGCAACATCTATGCTTGGTGGGTTCAACTCTTCGTGCTCCCCATGGCTGCCATGCTCAGTATATGGCCAATATGGGCTCCATTGCTTCATTAGCAATGGCAGTTATTATCAATGGTAATGATGATGAAGCTATTGGCGGCCAAAACTCAACAAGGCTTTGGGGTTTGGTTGTATGCCACCATACTTCTGCTCGGTGTATTCCATTCCCACTTCGGTATGCCTGTGAGTTTCTAATGCAAGCCTTTGGGCTTCAACTGAATATGGAATTGCAGTTGGCTTCACAGATGTCTGAGAAACATGTTTTGAGGACTCAAACTCTCTTGTGTGACATGCTTCTTCGTGATTCCCCAACTGGGATTGTTACACAGAGTCCAAGCATCATGGACCTTGTAAAGTGTGATGGGGCAGCTCTCTACTATCAAGGGAAATATTACCCTCTGGGTGTTACGCCAACCGAGGCCGAAATAAAGGATATTGTGGAATGGTTGTTGGCTTTCCATGGAGATTCAACTGGTTTAAGTACAGATAGCTTGGGTGATGCTGGATATCCAGGGGCAGCCTTGCTGGGTGATGCAGTTTGTGGAATGGCTGTTGCTTACATCACAAAAAGGGATTTGCTATTTTGGTTCCGATCACATACAGCAAAAGAGATCAAATGGGGTGGCGCAAAGCATCACCCAGAGGATAAGGACGATGGTCAAAGAATGCATCCACGTTCTTCATTCAAGGCATTCTTGGAAGTTGTAAAATCCCGTAGTTTACCATGGGAGAATGCAGAAATGGATGCAATTCACTCATTGCAGCTTATTCTGCGAGATTCATTTAAGGAAGATGTGGCAATGACTTCGAAGGCAGTTGTCCACCCTCAACTAGGGGATCTTGACTTACAAGGGATTGATGAGCTCAGCTCAGTTGCAAGAGAGATGGTCAGGTTAATTGAGACTGCAACTGCCCCTATCTTCGCTGTAGATGCCGATGGTCATATCAATGGATGGAACACGAAGATAGCTGAGTTGACTGGGCTTGCAGCTGAGGAAGCTATGGGGAAATCCTTAGTTCGTGAAGAAGACAAAAATGTAGAGATAAAAATGAGGACATTTGGGCCGGAAGATCAAAGAACGCCAATTTTTGTGGTTGTAAATGCTTGCTCTAGCAGGGACTACACCGATAATATAGTTGGTGTTTGTTTTGTTGGTCAAGATGTTACCTGCCAAAAAGTGTTCATGGACAAATTTATTAGCATACAAGGTGATTACAAAGCAATCGTTCATAGTCCAAATCCTCTTATCCCTCCAATATTTGCTTCAGACGACAATACATGTTGCTCAGAATGGAATACCGCCATGGAAAAGCTCACTGGATGGTCCAAAGAGGAGATAATTGGAAAAATGCTAGTAGGAGAGGTTTTTGGAAGTTGTTGTCGACTGAAGGGTCCAGATGCATTGACCAAATTTATGATTGTCTTGCACAGTGCAATTGGTGGGCAGGACAATGAAAAATACCCCTTTTCTTTTTATGACAAAAAGGGGAAATATGTGCAAGCTCTCTTGACAGCAAATAAGAGGATGAATATGGAGGGTCAGATTGTTGGAGCTTTCTGCTTCTTACAGATAGCTAGTCCTGAATTGCAGCAAACTCTTAGAATGCAGAGGCAACAGGAGAAGAACCGGTTTGCTAGGATGAAAGAACTGGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGTATACGCTTCACTAACTCACTTTTGGAGGCTACAGATTTGAGTGAAGATCAAAAACAGTTCCTCGAGACCAGTGTTGCTTGTGAAAAGCAGATGTTGAAGATTATAGAAGATATGGATTTGGAATGTATTGATGATGGTACGATGGAACTTGAGAAGGGGGAGTTCTTATTGGGAAGTGTTATCAATGCTGTTGTTAGCCAAGTGATGATACTCCTCAGAGAAAGGAACTTACAGCTGATCCGTGATATACCAGAAGAAGTAAAGACTATGGCTGTCTATGGCGATCAAATGAGGATTCAACAGGTCTTAGCTGATTTCTTGTTGAATATGGTCCGTTACGCACCCTCTCCAGAAGGTTGGGTAGAAATACGTGTCTGTCCATTCCTGAAGCAAAATCCAGATGGACATACTCTTGCACACACTGAATTCAGGATTGTATGCCCTGGGGAAGGTCTACCACCTGAGTTGGTTCAGGACATGTTTCATAGTGGCAGATGGGTGACTCAAGAAGGCTTAGGCTTAAGCATGTGCAGAAAGATACTGAAGCTCATGAATGGTGAAGTCCAGTACATCAGAGAGTCTGAAAGGTGTTATTTCTTGATCACTCTCGAACTCCCCTTGACAGAGAGAGGCCTAAACGACGTCGGTTAG 4557 44.24 MIAIDEASFRVIAYSENARELLGLTPQSVPSLEKPEILTIGTDVRNLFTSNSAILLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAKQLFRIQSCYCNSPIAQYTADARLHAVFEQSGESGKSFDYSQSIRTSTQSVPEQQITAYLSKIQRGGHIQPFGCMIAIDEASFRVIAYSENARELLGLTPQSVPSLEKPEILTIGTDVRNLFTSNSAILLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRADLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCNASPVRKMVSSNRATHWHQQQAQSSNTNTSNFRSHRTDSINKAIAQYTADARLHAVFEQSGESGKSFDYSQSIRTSTQSVPEQQITAYLSKIQRGGHIQPFGCMIAIDEASFRVIAYSENARELLGLTPQSVPSLEKPEILTIGTDVRNLFTSNSAILLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRADLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCNASPVRVIQEPGLMQHLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDDEAIGGQNSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQMSEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAEIKDIVEWLLAFHGDSTGLSTDSLGDAGYPGAALLGDAVCGMAVAYITKRDLLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKEDVAMTSKAVVHPQLGDLDLQGIDELSSVAREMVRLIETATAPIFAVDADGHINGWNTKIAELTGLAAEEAMGKSLVREEDKNVEIKMRTFGPEDQRTPIFVVVNACSSRDYTDNIVGVCFVGQDVTCQKVFMDKFISIQGDYKAIVHSPNPLIPPIFASDDNTCCSEWNTAMEKLTGWSKEEIIGKMLVGEVFGSCCRLKGPDALTKFMIVLHSAIGGQDNEKYPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFLQIASPELQQTLRMQRQQEKNRFARMKELAYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSVACEKQMLKIIEDMDLECIDDGTMELEKGEFLLGSVINAVVSQVMILLRERNLQLIRDIPEEVKTMAVYGDQMRIQQVLADFLLNMVRYAPSPEGWVEIRVCPFLKQNPDGHTLAHTEFRIVCPGEGLPPELVQDMFHSGRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLITLELPLTERGLNDVG 1518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10783802 10791086 - Cp4.1LG03g11870.1 Cpe03g01327 467044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01327 1518 Gene3D - 292 449 IPR029016 -
Cpe03g01327 1518 ProSiteProfiles PAS repeat profile. 1143 1195 IPR000014 -
Cpe03g01327 1518 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1396 1508 IPR003594 -
Cpe03g01327 1518 SUPERFAMILY PYP-like sensor domain (PAS domain) 182 296 IPR035965 -
Cpe03g01327 1518 SUPERFAMILY PYP-like sensor domain (PAS domain) 1157 1261 IPR035965 -
Cpe03g01327 1518 Gene3D - 820 993 IPR043150 -
Cpe03g01327 1518 SUPERFAMILY PYP-like sensor domain (PAS domain) 493 607 IPR035965 -
Cpe03g01327 1518 ProSitePatterns Phytochrome chromophore attachment site signature. 737 746 IPR013516 -
Cpe03g01327 1518 Pfam GAF domain 326 423 IPR003018 GO:0005515
Cpe03g01327 1518 Pfam GAF domain 637 815 IPR003018 GO:0005515
Cpe03g01327 1518 SMART HKATPase_4 1396 1511 IPR003594 -
Cpe03g01327 1518 Gene3D PAS domain 1025 1133 - -
Cpe03g01327 1518 Gene3D PAS domain 178 291 - -
Cpe03g01327 1518 Gene3D - 1347 1513 IPR036890 -
Cpe03g01327 1518 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 1272 1340 IPR036097 GO:0000155|GO:0007165
Cpe03g01327 1518 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1359 1508 IPR036890 -
Cpe03g01327 1518 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 637 805 IPR016132 -
Cpe03g01327 1518 Pfam PAS fold 1033 1127 IPR013767 GO:0006355
Cpe03g01327 1518 Pfam PAS fold 1143 1262 IPR013767 GO:0006355
Cpe03g01327 1518 SUPERFAMILY GAF domain-like 617 812 - -
Cpe03g01327 1518 CDD HATPase_Phy-like 1395 1507 IPR044767 -
Cpe03g01327 1518 Gene3D PAS domain 1 129 - -
Cpe03g01327 1518 PANTHER TWO-COMPONENT HISTIDINE KINASE 2 121 - -
Cpe03g01327 1518 PANTHER PHYTOCHROME 416 1512 - -
Cpe03g01327 1518 PANTHER PHYTOCHROME 134 408 - -
Cpe03g01327 1518 SMART gaf_1 637 825 IPR003018 GO:0005515
Cpe03g01327 1518 SMART gaf_1 326 455 IPR003018 GO:0005515
Cpe03g01327 1518 MobiDBLite consensus disorder prediction 413 435 - -
Cpe03g01327 1518 Pfam His Kinase A (phospho-acceptor) domain 1288 1348 IPR003661 GO:0000155|GO:0007165
Cpe03g01327 1518 SUPERFAMILY PYP-like sensor domain (PAS domain) 1035 1123 IPR035965 -
Cpe03g01327 1518 Gene3D PAS domain 492 740 - -
Cpe03g01327 1518 CDD PAS 1154 1262 IPR000014 -
Cpe03g01327 1518 Pfam PAS fold 488 604 IPR013654 GO:0006355
Cpe03g01327 1518 Pfam PAS fold 1 100 IPR013654 GO:0006355
Cpe03g01327 1518 Pfam PAS fold 177 293 IPR013654 GO:0006355
Cpe03g01327 1518 Gene3D PAS domain 1156 1264 - -
Cpe03g01327 1518 PRINTS Phytochrome signature 845 865 IPR001294 GO:0006355|GO:0009584
Cpe03g01327 1518 PRINTS Phytochrome signature 1105 1122 IPR001294 GO:0006355|GO:0009584
Cpe03g01327 1518 PRINTS Phytochrome signature 963 981 IPR001294 GO:0006355|GO:0009584
Cpe03g01327 1518 PRINTS Phytochrome signature 1125 1145 IPR001294 GO:0006355|GO:0009584
Cpe03g01327 1518 PRINTS Phytochrome signature 930 949 IPR001294 GO:0006355|GO:0009584
Cpe03g01327 1518 PRINTS Phytochrome signature 552 574 IPR001294 GO:0006355|GO:0009584
Cpe03g01327 1518 PRINTS Phytochrome signature 737 758 IPR001294 GO:0006355|GO:0009584
Cpe03g01327 1518 PRINTS Phytochrome signature 652 671 IPR001294 GO:0006355|GO:0009584
Cpe03g01327 1518 CDD HisKA 1284 1340 IPR003661 GO:0000155|GO:0007165
Cpe03g01327 1518 SUPERFAMILY GAF domain-like 823 1000 - -
Cpe03g01327 1518 SUPERFAMILY PYP-like sensor domain (PAS domain) 1 103 IPR035965 -
Cpe03g01327 1518 SMART pas_2 1142 1212 IPR000014 -
Cpe03g01327 1518 SMART pas_2 1032 1095 IPR000014 -
Cpe03g01327 1518 ProSiteProfiles PAS repeat profile. 1 29 IPR000014 -
Cpe03g01327 1518 Gene3D - 1265 1346 - -
Cpe03g01327 1518 TIGRFAM sensory_box: PAS domain S-box protein 1037 1079 IPR000014 -
Cpe03g01327 1518 SMART HisKA_10 1284 1348 IPR003661 GO:0000155|GO:0007165
Cpe03g01327 1518 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 326 407 IPR016132 -
Cpe03g01327 1518 SUPERFAMILY GAF domain-like 306 416 - -
Cpe03g01327 1518 Gene3D - 618 976 IPR029016 -
Cpe03g01327 1518 ProSiteProfiles PAS repeat profile. 1030 1080 IPR000014 -
Cpe03g01327 1518 ProSiteProfiles Histidine kinase domain profile. 1291 1511 IPR005467 -
Cpe03g01327 1518 Pfam Phytochrome region 828 1002 IPR013515 GO:0006355|GO:0009584
Cpe03g01327 1518 PANTHER TWO-COMPONENT HISTIDINE KINASE 416 1512 - -
Cpe03g01327 1518 PANTHER TWO-COMPONENT HISTIDINE KINASE 134 408 - -
Cpe03g01327 1518 CDD PAS 1041 1127 IPR000014 -
Cpe03g01327 1518 PANTHER PHYTOCHROME 2 121 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01327 Cpe08g00149 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01327 Cpe-Chr3:10783802 Cpe20g00493 Cpe-Chr20:2847129 2.28E-34 dispersed
Cpe03g01327 Cpe-Chr3:10783802 Cpe08g00149 Cpe-Chr8:975528 6.15E-61 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01327 K12121 - csv:101212197 2133.99