Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01329 ATGGGTGAAAAAAAGGGAGAGGAGAAAATTACAGTGATAATAAGGGAAGTGAATGAAGAAAGAGACACAGAAATGGTGGAAAAACTGGAGAGAAGCTGTGAAATTGGGTCTAAATTAGGAGGGGCCTCCATTTTTACCGATATGATGGGCGATCCTCTTTGTAGGATCAGATTCTACCCACTTCATATTATGCTGGTGGCTGAGCTGCCGGAAAAGGGAGACGTCGTGGGAGTGGTTAGAGGCTGCATTAAGTCTGTGGGGACTGGCGGCGCCGCCGCCGGAGAAGCTAATACCACCAGGATTGGTTGCATATTGGGCCTTCGTGTTTCTCCTGCTCACAGGAGGTTGGGAATTGGGCTAAAGCTAGTACACTCAGTTGAAGAATGGGTAATAAGAAATGGAGCTCCCTATGCATTTCTAGCAATAGAGAAGAAGAACAAAGCCTCAAAGAATCTCTTCACTCGCAAATGCAACTATGTAAAATTCAGCTCATTGGTGATATTCAGACAGCCAATTGTGTTCCCAACAAAAGACATCTCTAATGGGGAAATAAAGACAGAGAAACTGAACATAGAGCAAGCAATTTCATTCTACACAAACTGTCTCACAGCTAAAGGAGTTTATCCAATGGATTTTGATGTGATTTTGAAGGAAAAACTGAGTATTGGCACATGGATTTCTTATTTCAATCAAGAAGATTGGACCCAATTGATTTGTTCAGAGAAGGATTCAGAGATTTACCAGAGAATGCCAAGCTCTTGGGTGAGTAGTGATGATGAAAGGGATGAAATGTTGTTGTCAAAGGATATGGAAGCAGCTGCAAATGTGATTGTTGACCCCAGAGACTTCTAG 852 42.61 MGEKKGEEKITVIIREVNEERDTEMVEKLERSCEIGSKLGGASIFTDMMGDPLCRIRFYPLHIMLVAELPEKGDVVGVVRGCIKSVGTGGAAAGEANTTRIGCILGLRVSPAHRRLGIGLKLVHSVEEWVIRNGAPYAFLAIEKKNKASKNLFTRKCNYVKFSSLVIFRQPIVFPTKDISNGEIKTEKLNIEQAISFYTNCLTAKGVYPMDFDVILKEKLSIGTWISYFNQEDWTQLICSEKDSEIYQRMPSSWVSSDDERDEMLLSKDMEAAANVIVDPRDF 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10797687 10800762 - Cp4.1LG03g11730.1 Cpe03g01329 467046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01329 283 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 10 255 - -
Cpe03g01329 283 CDD NAT_SF 64 140 - -
Cpe03g01329 283 Gene3D - 11 173 - -
Cpe03g01329 283 Pfam Acetyltransferase (GNAT) family 67 159 IPR000182 GO:0016407
Cpe03g01329 283 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 12 162 IPR016181 -
Cpe03g01329 283 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 12 180 IPR000182 GO:0016407
Cpe03g01329 283 PANTHER N-ACETYLTRANSFERASE HLS1-LIKE ISOFORM X1-RELATED 10 255 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01329 - - - mcha:111009312 413.305
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01329 Cpe-Chr3:10797687 Cpe10g00476 Cpe-Chr10:2803720 8.53E-18 dispersed
Cpe03g01329 Cpe-Chr3:10797687 Cpe03g00909 Cpe-Chr3:5840225 4.98E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g71 . . . . . . . . . . . . . Car14g01401 Sed12g0774 . Cpe03g01329 Bhi01g01087 Tan10g1074 Cmetu06g1614 . Hepe05g1384 . Lcy11g1339 . . . . . . . . . . . Lsi05g01594 . . Cme06g00787 . Blo07g00146 . . . Bpe13g00694 . Bma06g01468 . . Cmo14g01621 . . . . . . . . . . . . . Cla05g00704 Cam05g0770 Cec05g0779 Cco05g0772 Clacu05g0760 Cmu05g0726 Cre05g0800 . Csa03g01516 Chy06g00753 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013261 0 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49251 PF00583 Acetyltransf_1 3.70E-12 CL0257 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01329 Cpe_Chr03 FPKM 34.084923 35.02005 53.393833 53.750523 21.334188 20.895767 19.614254 105.638351 106.876801 111.590485