Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01333 ATGACTAATATGGCTCTTCGGAAGTTTGTTTGTGGTGCTACACCTTCTATTAACTTGAAACATTCAAGTTTTCCCGCTAAGGTGCATGAGCAAGCTCAATTTGAAGAACCTGAGACTAACCAGACGTTGGAGCCTGATGTAGAAATTGACCCTAGAGAAGTTTATTTTCTTATTATGCACTTTCTTTCATCTGGGCCATGTCGTAGAACTTGTGGGCTGCTCTGGGATGAGCTTTTTGAAAATCAGCTTTTACCCCGACGATATCATGCTTGGTATTCAAGAAATGGGATGCATAGTGGGCATGAAAATGACGATGGCTTGTCATTTCCATTAAGTTACCAACACTTAGTGGAGAGGTATGCATCTCTTATTGTTAATCAATTAGCATTGCTTAAGTTTTTTAGGTATCCACATGTCGATAAGAATCACCTGATAAAACTTTTGAAGCAATTGATGCTTAACAAGGCCCCTCCATCTAGGGGTATGAGTGGTGCAATTGCTCCAAATGCAGCGGACGTACCTACGTTATTGGGAACGGGCACATTTTCACTTCTGAGCTATGATAAAAATGATGGAGTTGGCAAACCAAGTGGTCCCCCATCCCACATGCGTTGGCCTCATATGAAAGCTGATTCTGTTCGTGGATTAAGTTTGAGAGAAATTGGAGGTGGTTTCTCCCGACATCAACGTGCTCCTTCTGTGCGTGCAGCATGTTATGCAATTGCTAAGCCATCAACAATGGTGCAGAAAATGCAAAACATAAAGAGGCTACGAGGGCATCGTAATGCTGTTTATTGTGCAAGTTTTGATCGCATGGGAAGGTATGTTATAACTGGTTCAGATGATCGCCTTGTAAAGATTTGGTCAATGGAAACTGCATATTGCTTGGCAAGCTGCCGAGGACATGAGGGTGATATCACTGACCTTGCTGTAAGTTCTAACAATGCTGTGGTGGCGTCATCTTCAAATGATTTTGTTATTCGTGTTTGGCGTTTGCCTGATGGGCTGCCAATTTCAGTCTTACGAGGACATACTGGTGCTGTTACTGCAATTGCCTTTAGTCCCAGAGCTGCCTATCAGCTTCTTTCATCGTCAGATGATGGAACGTGTAGGTTATGGGATGCTCGGAGCTCTTCTCAGAATGCTCCTCGTATTTATGTTCCAAGGCCTTTGGACTCTGTGACTGCAAGAAATGGTGGCTCTTCTGCGAGTACTCTTCCTCAGAGTCATCAAATATTTTGCTGTGCATTTAATGCTTGTGGCACTATTTTTGTTACTGGTAGTTCTGACACTCTAGCAAGGGTTTGGAGTGCCTGTAAAGGAAACAATGATAACCCAGACCAACCAAACCACGAGATTGATGTGTTAGCTGGCCATGAGAATGATGTCAATTATGTGCAATTCAGTGGATGTGCCGTAGCATCAAGATTTACAACTACTGACATTGTGAAGGAAGACAATGTTCACAAGTTCAAAAACTCCTGGTTCACTTATGACAACATAGTTACTTGTTCTCGTGATGGCAGTGCAATTATTTGGGTTCCAAGGTCACGGAGGTCACATGGGAAGGTAGGTCGCTGGACCCGTGCATACCATTTAAAAGTGCCTCCTCCACCCATGCCCCCACAACCTGCCCGAGGCGGCCCTCGTCAGAGGATTCTTCCTACCCCTCGTGGTGTAAATATGATAATTTGGAGCCTAGATAATCGTTTTGTCTTAGCAGCTATAATGGATTGTAGAATTTGTGTTTGGAATGCCTCTGATGGCAGCTTAGTGCACTCTTTGACGGGTCATACTGAATCTACGTATGTACTCGATGTTCATCCTTTTAATCCAAGGATTGCTATGAGTGCTGGATACGATGGAAAAACAATAGTTTGGGATATTTGGGAAGGCACGCCAATTCGGATATATGAAATTTCTCATTTCAAACTGGTTGATGGGAAGTTTTCTTCAGACGGGACATCAATTATACTTTCAGATGATGTTGGGCAGCTATATATATTAAGCACCGGGCAGGGAGAATCCCAACAGGATGCCAAGTATGATCAGTTCTTTCTTGGTGACTATCGCCCACTTATTCAGGATCCTTTCGGCAATGTAGTTGACCAAGAAACCCAACTCAGTACTTACAGACGGAATTTGCAAGATCTCCTTTCTGACTCAGGCATGATACCTTATCCAGAACCTTATCAGACTGCATATCAGCAAAGACGTTTAGGTGCTATGGGTCTTGAGTGGCGTCCCTCTTCTCTAAAACTTTCTACTGGGCCTGACTTCAATCTCGACCCAGATTACCAATTGCTGCCATTGGCAGACTTGGACATGTTGATTGAACCATTGCCTGAGATTGTGGATGCAATGGATTGGGGACCAGAAAATGAAGTACAAAGCGATGATACTGATTCGGAATATAACGTCACCGAGGATTACTCTACTGGTGGGGAGCAAAGAAGCCTAAATTCGAACTGCTCAACGGATTCAGAATGCAGCTCCGATGACACAGGGATTGACGATGGTCTTCGAAGGTCAAAAAGGAAAAAACAGAAAGCATACATGGAGGTCATGACTTCTTCAGGAAGGCGTGTTAAAAGAAGAAATATGGATGAGTATGAAGGTGATACTGTTAGGAATTCCAGAAATCGGAAGTCAAAATCTGGCCATAGAGCATCCAAAAAGAAATCAGCATCTAAGTCATTAAGACCTCAAAGAGCGGCTGCACGTAATGCTCGCAACTGGATATCATCGTTTAAGGGAAAATGTACAGATGGAGAAGATGAATATGAGTCGGGAGGTGATTGCTCAGAAAGTGAATCTACATTAGAAGATTCAGACATTGAGAGTGATGAATATGAAAGGTCATTGCAAAACAGAAATAAACATTCAAAAGGGAAAGAAGTATTCCTTGATGAAGCTGAGTTGATTACAAAACCTCTCGACATTCCTGAATCTCGTGTAGATTCTGGAAACAGAAAGAAGTTGATCCTTAAATTCTCCCTTAAGAATCCAAATAAGGTTGATCCTCCTTCAAACACAACACTTACTTGCACCAACATGGCTGATGTGGCTAGCTCATCATCAAGATCACCAAAGGAAGTTATTGAAACCAGTCAGAATCTTATGAGATCCGAGAGACAATTTGGAAATACTGATGGACATTCTGATCTGACTGAGGTCTACACAAATGGGAACATAAGATGGGGAGGGTCCAAGGTTCGATCGTCCAAGCGCATAAGATTAGATGCATATGCATTATCTAGTCCATTTCGCAATGGCGATCATAATGAAAATGAGAATACTGTTCATGAATATTTAGAACGAGAAAATCATTTTGGTGCACCATCCCCCCATTCAAAGATACAGAATTATTGTGCAGATGAAACACATGCTGTATCCCTGACGAATTTGAAAGATGACGATGATAATGCTTCTGGGCACTCTCCTGAGATGGTCAATGGTGGTGAGCTTAAATGTGTTAGCAACAGCAAATCATGTGATGATCATGATGATTCAAATAATTTGAATTTCATGTTTTCTTCAGATGCAACCACATCAATACAATATGGGACTCCTGCTCCTGAGAAAACTGAAAATATTGCACCAATGTGTACAAAGATAAGGTTGAAGAGTAGTTCTTTGGATCCTGAACATTCTTTGAAGCACAAAATAGAATCCTTAGACGAAAACTCGAAGAATGATGAATACTATACAGTATCTGGAAGCCCACGGCGTCTGAATGGGCTGCAGGATACTGTCATGAATGAAGCCTTTTCTGATCTAAGAAATGATTGCCCACAAGATATGGACACTGCGATGGATGAAAAACCAATATCAACCTTATGTAACTCATCAGAGTTGCAAGCAGTTGAGACAAACAAAATGTACACTGCTGTTTATAGAAGATCTAAGTCGAACAAAGGAAAGAGCAATCTAGAAAGCAACGGTTGTGACTCAGGGGAACATGCATTGGGCAACATTGGTCTGTCTGCTGAAGCAAACAATCACAAAAGTATGCTTCGTAAGACACGATCTTTAAGGTTCAAGGACTCATATGATCCAAATAATGTGTGTGATGATCTGAAATCAGATGAAGATCAAGAACTTGAACAGAAATCAAGACGTTCTGGAAATTCTCCTGCAAACAGATCCCATATACCAAGTGAAGAGTGGGGATCAAGCTCAAGGATGACAGTTGGATCCAGATCCACTCGAAACAGAAGGGGTAGTCTTACTCAAGACCTAAATCCTGTAGATAGAAGAAAGTCGGTTCAATATGCCAGAAAAGGATCATGGTTAATGATGCCTGCACATGAGGGTGGCTCGAGATATATTCCCCAACTTGGAGATGAAGTTGCATATCTGAGACAGGGTCATCAGGAATACATAGATCACTGTTGTGCAAATTACTGTCACACAAAAGACATGGGACCTTGGACCGCAACCCGAGGAACCATACGAGCTGTTGAGTTCTGTAAGGTTGTGGAGCTTGTTTATTCAACTTCTGCAGGTTCCGGAGATAGTTGCTGTAAAATGCTACTCAAGTTCATAGATCCTGCTTCCTCTGTATACCTCCAATCTTTCAAGTTAACCCTACCCGAGTTGACTAGTTTCCCTGACTTCTTAGTCGAAAGGACTCGGTTTGAAGCAGCAATGCAGAGGAATTGGACATTCAGGGACAAGTGCAAAGTGTGGTGGAAAAATGATGTTGGAGTAGATGGTAGTTGGTGGGATGGTCGGATTGTCTCTGTGCAGCCAAAATCTTCAGAGTTTCCAGAAAGTCCTTGGGAAAGGTACACAATTAAGTATAGGAGTGATCCTGCGGAACCACATTTACATAGTCCTTGGGAGCTTTATGATATTGTTACTCAGTGGGAACAGCCTCGAATAGATGACGAAAACAAAGCAAAGTTGTCGACTGCCTTCGACCAATTAATGTCGGCCCCTATGCAGGGCCGTTATGGGATTCAAGATCTGATGCTTCTCTCACGGAAGACACAATTCAAGAACAGGTTTCCTGTACCATTGTGCCTTGAGATAATCCAGGAAAGATTACAGAACGATTACTACCGAAACTTGGAGGCTTTGAAGCATGACTTCATGGTAATGCTATCGAATTACGAGTCGTTCGTGGCTAAGAACGAAGACATGTCGAAGAAAATTAGACGCTTGTCAGACTGGTTTAATCGCAACATATCGCCTTTATAG 5205 42.31 MTNMALRKFVCGATPSINLKHSSFPAKVHEQAQFEEPETNQTLEPDVEIDPREVYFLIMHFLSSGPCRRTCGLLWDELFENQLLPRRYHAWYSRNGMHSGHENDDGLSFPLSYQHLVERYASLIVNQLALLKFFRYPHVDKNHLIKLLKQLMLNKAPPSRGMSGAIAPNAADVPTLLGTGTFSLLSYDKNDGVGKPSGPPSHMRWPHMKADSVRGLSLREIGGGFSRHQRAPSVRAACYAIAKPSTMVQKMQNIKRLRGHRNAVYCASFDRMGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAVVASSSNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRAAYQLLSSSDDGTCRLWDARSSSQNAPRIYVPRPLDSVTARNGGSSASTLPQSHQIFCCAFNACGTIFVTGSSDTLARVWSACKGNNDNPDQPNHEIDVLAGHENDVNYVQFSGCAVASRFTTTDIVKEDNVHKFKNSWFTYDNIVTCSRDGSAIIWVPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPARGGPRQRILPTPRGVNMIIWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGTPIRIYEISHFKLVDGKFSSDGTSIILSDDVGQLYILSTGQGESQQDAKYDQFFLGDYRPLIQDPFGNVVDQETQLSTYRRNLQDLLSDSGMIPYPEPYQTAYQQRRLGAMGLEWRPSSLKLSTGPDFNLDPDYQLLPLADLDMLIEPLPEIVDAMDWGPENEVQSDDTDSEYNVTEDYSTGGEQRSLNSNCSTDSECSSDDTGIDDGLRRSKRKKQKAYMEVMTSSGRRVKRRNMDEYEGDTVRNSRNRKSKSGHRASKKKSASKSLRPQRAAARNARNWISSFKGKCTDGEDEYESGGDCSESESTLEDSDIESDEYERSLQNRNKHSKGKEVFLDEAELITKPLDIPESRVDSGNRKKLILKFSLKNPNKVDPPSNTTLTCTNMADVASSSSRSPKEVIETSQNLMRSERQFGNTDGHSDLTEVYTNGNIRWGGSKVRSSKRIRLDAYALSSPFRNGDHNENENTVHEYLERENHFGAPSPHSKIQNYCADETHAVSLTNLKDDDDNASGHSPEMVNGGELKCVSNSKSCDDHDDSNNLNFMFSSDATTSIQYGTPAPEKTENIAPMCTKIRLKSSSLDPEHSLKHKIESLDENSKNDEYYTVSGSPRRLNGLQDTVMNEAFSDLRNDCPQDMDTAMDEKPISTLCNSSELQAVETNKMYTAVYRRSKSNKGKSNLESNGCDSGEHALGNIGLSAEANNHKSMLRKTRSLRFKDSYDPNNVCDDLKSDEDQELEQKSRRSGNSPANRSHIPSEEWGSSSRMTVGSRSTRNRRGSLTQDLNPVDRRKSVQYARKGSWLMMPAHEGGSRYIPQLGDEVAYLRQGHQEYIDHCCANYCHTKDMGPWTATRGTIRAVEFCKVVELVYSTSAGSGDSCCKMLLKFIDPASSVYLQSFKLTLPELTSFPDFLVERTRFEAAMQRNWTFRDKCKVWWKNDVGVDGSWWDGRIVSVQPKSSEFPESPWERYTIKYRSDPAEPHLHSPWELYDIVTQWEQPRIDDENKAKLSTAFDQLMSAPMQGRYGIQDLMLLSRKTQFKNRFPVPLCLEIIQERLQNDYYRNLEALKHDFMVMLSNYESFVAKNEDMSKKIRRLSDWFNRNISPL 1734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10825398 10839986 + Cp4.1LG03g11780.1 Cpe03g01333 467050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01333 1734 MobiDBLite consensus disorder prediction 882 899 - -
Cpe03g01333 1734 Pfam WD domain, G-beta repeat 409 437 IPR001680 GO:0005515
Cpe03g01333 1734 Pfam WD domain, G-beta repeat 337 374 IPR001680 GO:0005515
Cpe03g01333 1734 Pfam WD domain, G-beta repeat 295 330 IPR001680 GO:0005515
Cpe03g01333 1734 Pfam WD domain, G-beta repeat 252 289 IPR001680 GO:0005515
Cpe03g01333 1734 Pfam WD domain, G-beta repeat 589 628 IPR001680 GO:0005515
Cpe03g01333 1734 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 298 IPR001680 GO:0005515
Cpe03g01333 1734 Gene3D - 238 395 IPR015943 GO:0005515
Cpe03g01333 1734 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 257 292 - -
Cpe03g01333 1734 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 340 IPR001680 GO:0005515
Cpe03g01333 1734 Gene3D - 485 685 IPR015943 GO:0005515
Cpe03g01333 1734 ProSiteProfiles Trp-Asp (WD) repeats profile. 595 637 IPR001680 GO:0005515
Cpe03g01333 1734 SMART WD40_4 547 585 IPR001680 GO:0005515
Cpe03g01333 1734 SMART WD40_4 334 374 IPR001680 GO:0005515
Cpe03g01333 1734 SMART WD40_4 588 628 IPR001680 GO:0005515
Cpe03g01333 1734 SMART WD40_4 449 514 IPR001680 GO:0005515
Cpe03g01333 1734 SMART WD40_4 399 437 IPR001680 GO:0005515
Cpe03g01333 1734 SMART WD40_4 292 331 IPR001680 GO:0005515
Cpe03g01333 1734 SMART WD40_4 250 289 IPR001680 GO:0005515
Cpe03g01333 1734 SUPERFAMILY Bromodomain 1672 1732 IPR036427 GO:0005515
Cpe03g01333 1734 SUPERFAMILY WD40 repeat-like 248 671 IPR036322 GO:0005515
Cpe03g01333 1734 MobiDBLite consensus disorder prediction 928 949 - -
Cpe03g01333 1734 MobiDBLite consensus disorder prediction 792 911 - -
Cpe03g01333 1734 MobiDBLite consensus disorder prediction 923 963 - -
Cpe03g01333 1734 ProSitePatterns Trp-Asp (WD) repeats signature. 361 375 IPR019775 -
Cpe03g01333 1734 Gene3D - 1637 1734 IPR036427 GO:0005515
Cpe03g01333 1734 Gene3D - 400 475 IPR015943 GO:0005515
Cpe03g01333 1734 MobiDBLite consensus disorder prediction 1348 1372 - -
Cpe03g01333 1734 MobiDBLite consensus disorder prediction 1373 1415 - -
Cpe03g01333 1734 Coils Coil 701 721 - -
Cpe03g01333 1734 Pfam Bromodomain 1666 1719 IPR001487 GO:0005515
Cpe03g01333 1734 CDD WD40 253 628 - -
Cpe03g01333 1734 MobiDBLite consensus disorder prediction 807 831 - -
Cpe03g01333 1734 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 341 377 - -
Cpe03g01333 1734 PANTHER WD REPEAT DOMAIN 9 42 1733 - -
Cpe03g01333 1734 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 42 1733 - -
Cpe03g01333 1734 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 299 332 - -
Cpe03g01333 1734 MobiDBLite consensus disorder prediction 1348 1415 - -
Cpe03g01333 1734 ProSitePatterns Trp-Asp (WD) repeats signature. 615 629 IPR019775 -
Cpe03g01333 1734 MobiDBLite consensus disorder prediction 859 881 - -
Cpe03g01333 1734 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 383 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01333 K11797 PHIP, DCAF14; PH-interacting protein - csv:101214610 3113.94
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01333 Cpe08g00155 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01333 Cpe-Chr3:10825398 Cpe03g00852 Cpe-Chr3:5351688 4.24E-08 dispersed
Cpe03g01333 Cpe-Chr3:10825398 Cpe08g00155 Cpe-Chr8:1008171 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g84 . . . . . . . . . . Cma06g01559 Cma14g01594 Car06g01323 Car14g01407 Sed12g0779 Cpe08g00155 Cpe03g01333 Bhi01g01082 Tan10g1069 Cmetu06g1713 . Hepe05g1390 . Lcy11g1346 . . . . . . . . . Cone7ag0105 Cone4ag0108 Lsi05g01586 . . Cme06g00781 Blo02g00479 Blo07g00153 Bda11g00507 Bda13g00214 . Bpe13g00691 Bma02g00927 . . Cmo06g01556 Cmo14g01626 . . . . . . . . . . . . . Cla05g00697 Cam05g0765 Cec05g0774 . . Cmu05g0720 . . Csa03g01511 Chy06g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004915 2 1 2 1 1 1 2 1 1 1 1 1 3 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01333 Cpe_Chr03 FPKM 46.918385 41.923592 20.916677 16.874687 25.519161 28.08272 26.371067 23.163624 26.191338 24.42164