Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01344 ATGTCTACGGCGAGTTCGAGCACTGTAAGGAAAGCCGGCGAGGCTGTTCCCGACCAGTTTCCGGTCGGGCTTCGTGTTCTTGTTGTGGATGATGATCCGACCTGTCTTATGATCTTGGAGAAGATGCTTCGTATTTGCCGCTATGATGACACCAGAAGCTGTGTTATTAACGAACAAGTTGTCTGGTTTTTGAGTGTTTCAGTAACGAATTGTAGTCGAGCCGAGGATGCATTGTCTCTTCTCAGACGATACAAAAACGGGTTCGACATCGTTTTAAGCGATGTCCACATGCCAGACATGGACGGATTCAAACTTCTGGAATACATAGGATTAGAAATGGACTTGCCTGTAATCATGATGTCGGTGGATGACGGGAAAAACGTCGTCATGAAGGGAGTAACTCATGGTGCTTGTGACTATTTAATAAAACCTGTTCGAATTGAAGCGTTAAAGAACATTTGGCAGCATGTTGTTCGTAAGCGGAAGAATGAATGGAAAGACTTGGAGCAATCGGGATGTATCGATGATGTCGTCGATCGACAGCAGAAAACTAATGAAGATGCAGATTATTCATCGTCTGCTAATGAAGGGAGTTGGAAGAACTCAAAGAGGAGGAAGGAGGACGTAGAAGACCTCGAGGAGAGGGACGATTCATCGACCTTAAAGAAACCGAGGGTCGTTTGGTCCGTTGAGCTCCATCAACAGTTTATGGCTGCTGTTAATCAACTAGGAATTGATAAGGCCGTTCCGAAGAAGATACTCGAGTTGATGAATGTCCCTGGACTCACTAGAGAAAACGTTGCCAGCCACCTTCAGAAATATCGTTTGTACCTGAGAAGAGTAAGTGGAATCACACAACACCAGAGTAATTTAAACAACACGTTCATGAGTGCCCAAGACGTGTTTGGCTCGTCGTTGAACGGTCTTGATCTTCGAACTCTCGCTGCTGCTGGTCAGCTCCAGCCACAAAGCCTTGCTACACTTCAAGCAGCTGGATTCGGTAGGTCTACAGCGAAATCGAGCATGCCTATGCCTCTTGTAGATCAAAGGAACCACATTTTTAGCTTCGAAAATCCGAAGTTGAGATTCGGTGACGAGCAACAGCGATATTTGAATGGTAGTAAATCGATGAATCTACTTCATGGAATCCCGACAACGATGGAGCCGAAACAGCTTGCTAATCTGCAGCAATCGGCGCAATCTCATGGGAATATGACAATGCAAGTTAGTACACAAGGAAGCCAATCTAGCTCTCAACCACAAGCTAGAGCACAGATTCTCAAAGAAAGTACCTCAACGAGTGTAACGAGGCTTCCACCGACATCGCAGCAGCCAATTTTGCCGAATGGAACGGCCGGTGGAGGTTACAGTGTAGTTTCACCAGCCTCAACAATGTTAAATTTCCCCGAATTGCCTGGTAATAGTTTTCCTCTTCAAAGTACCCCAGGAATGTCGAGTGTCGTACCAAAGGGAAGATTCCCAGACGACGTTAACTCGAACATTAAACGATCGGAAGGTTTTGTGCCAAACTATGATATGTTCAGGGACCTGCATCCTCAGAAGCCCCATGATTGGGACTTGCAACATGTCGGTGTGACGTTCGATACGTCTCAAGGTAGTCTCGACGTTCCACCCTCAGCTTTCGCTCACCAAGGGTATGCTGCCTCTAGCCAACAAAATGGACAAAACAGGAACGCATCTACTGCAGGCAAGGCCATGTTCTTGTTGGACGAACGAAGTGACAATGGGAACAAACAAAGTATGAGCCAACAACTCGACCCTCGTTTCGTCAATGGTTCAGTGAGAGTCAAAGCTGAAAGAGCTCCTGATACGAGCAGTCAACCCGACCTTTTCTCTGAACACTTCGGTCCAGAGGACCTAATGAGTGCAGTTCTTAAGCAGGTTAGATCGCAGTACCGTTCTGGCATTCCTAAGACGAAACTCGGGAAGTTTAAGGTTGTTTTTATTAATGATGTGGTAAATGTTTTGTTTGACAGCAACAGGGAAGCATTGCAGCAGCTGAAAGTGAACTGGAATGGATGTTTCATCATAACACTCCTGTTTAGAATGTTGCTTTAG 2079 45.89 MSTASSSTVRKAGEAVPDQFPVGLRVLVVDDDPTCLMILEKMLRICRYDDTRSCVINEQVVWFLSVSVTNCSRAEDALSLLRRYKNGFDIVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGCIDDVVDRQQKTNEDADYSSSANEGSWKNSKRRKEDVEDLEERDDSSTLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRVSGITQHQSNLNNTFMSAQDVFGSSLNGLDLRTLAAAGQLQPQSLATLQAAGFGRSTAKSSMPMPLVDQRNHIFSFENPKLRFGDEQQRYLNGSKSMNLLHGIPTTMEPKQLANLQQSAQSHGNMTMQVSTQGSQSSSQPQARAQILKESTSTSVTRLPPTSQQPILPNGTAGGGYSVVSPASTMLNFPELPGNSFPLQSTPGMSSVVPKGRFPDDVNSNIKRSEGFVPNYDMFRDLHPQKPHDWDLQHVGVTFDTSQGSLDVPPSAFAHQGYAASSQQNGQNRNASTAGKAMFLLDERSDNGNKQSMSQQLDPRFVNGSVRVKAERAPDTSSQPDLFSEHFGPEDLMSAVLKQVRSQYRSGIPKTKLGKFKVVFINDVVNVLFDSNREALQQLKVNWNGCFIITLLFRMLL 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10903145 10906856 - Cp4.1LG03g11620.1 Cpe03g01344 467061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01344 692 MobiDBLite consensus disorder prediction 408 450 - -
Cpe03g01344 692 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 54 IPR045279 GO:0009736
Cpe03g01344 692 PANTHER TWO-COMPONENT RESPONSE REGULATOR 49 629 IPR045279 GO:0009736
Cpe03g01344 692 ProSiteProfiles Response regulatory domain profile. 25 158 IPR001789 GO:0000160
Cpe03g01344 692 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 223 276 IPR006447 GO:0003677
Cpe03g01344 692 SUPERFAMILY Homeodomain-like 220 280 IPR009057 -
Cpe03g01344 692 Gene3D - 220 282 - -
Cpe03g01344 692 Pfam Response regulator receiver domain 26 152 IPR001789 GO:0000160
Cpe03g01344 692 SUPERFAMILY CheY-like 23 166 IPR011006 -
Cpe03g01344 692 Pfam Myb-like DNA-binding domain 225 275 IPR001005 -
Cpe03g01344 692 SMART REC_2 24 154 IPR001789 GO:0000160
Cpe03g01344 692 CDD REC_typeB_ARR-like 26 158 - -
Cpe03g01344 692 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 54 - -
Cpe03g01344 692 PANTHER TWO-COMPONENT RESPONSE REGULATOR 49 629 - -
Cpe03g01344 692 PIRSF RR_ARR_type-B 6 641 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cpe03g01344 692 MobiDBLite consensus disorder prediction 199 217 - -
Cpe03g01344 692 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 222 279 IPR017930 -
Cpe03g01344 692 Gene3D - 24 173 - -
Cpe03g01344 692 MobiDBLite consensus disorder prediction 184 217 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01344 Cpe17g00047 CCT
Cpe03g01344 Cpe12g00300 CCT
Cpe03g01344 Cpe12g00300 ECH
Cpe03g01344 Cpe17g00047 ECH
Cpe03g01344 Cpe08g00165 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01344 Cpe-Chr3:10903145 Cpe06g00305 Cpe-Chr6:1686684 1.39E-98 dispersed
Cpe17g00768 Cpe-Chr17:6046302 Cpe03g01344 Cpe-Chr3:10903145 4.67E-13 dispersed
Cpe12g00300 Cpe-Chr12:1997163 Cpe03g01344 Cpe-Chr3:10903145 0 wgd
Cpe17g00047 Cpe-Chr17:301283 Cpe03g01344 Cpe-Chr3:10903145 0 wgd
Cpe03g01344 Cpe-Chr3:10903145 Cpe08g00165 Cpe-Chr8:1065824 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49254 PF00072 Response_reg 2.30E-16 CL0304 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01344 - K14491 csv:101209013 1050.43