Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01352 ATGTTTCTGACTGCGTTGTGTGCTTGGGATTTTTTCGAGGGTGTAGCTGCTCTGCTTCTTCAAGATTCGATTCAGGTGTACAGTCGTAAGGTTGAATACCTCTACTCATTGGTTTTGCGAGCTTTGGAGTTCCTCTCCGAAAAGAGGCAGAAGGATCCTTTGGAAGGGACCTCAATCGAGGCTGAACAAGATGGTTCTCATGAAATTGCTGAGGATGAAAACGACCTATTTTGGGTTTCAGAGGATGTGCCAGTTGACACGAAGAATACTTTGGAGAGTACCAAAGAAGATGCTTGGTTAAATCAAACTGTAAAGCCTCCAGCAAATTTAGTCGTTCTTGAAGGTGATTGCTTGGATGCATCTGGTGACAATGGTGAACTAGACTCATACTTGTTGGCCTCCACTAGTGATATTTTCCAAGACTTCGTTCTCTTAGATTCATGTGATGCTGAGGCAGTTCAAGATTTTTTGAATGGTGGTCATAAGTTTGGCCAAAGCCATAATGGTGGATTCAGAGGCAGCTCAACCCACAGGGGTTTTCAGTCTCCCTCTAGACGTTCTGGTGGAAGTATGCAGAAATCATCAGTAGGAAAGACTCAGGGTGCTAATGTTGCTCGGACACCGTTTTCCAATCATTGCTTCGTGTCTGATCCTCCATCTTGTGATAATTTTGCCAATGAAAATCATGAATTTGACATGGATGCTGGGAATCCAGAACCAGATGACTCAAATGGTTCTGAAGACGATTATGATCCTTGGAAGCCTTTGAATCCTCATGAGCCAGGAAATTTAAAAATAAAACCATTTAGAAAAGTAAAAGCTTTTAAAAAGAATTATGTCAATTCTGGTAAGCATGAGTCTGTAGCTGCTTTGTTTCCACTAGCTAAATTACAAGGCCCAGTTAGCCCAGAGTTCGCGAAGCTTTGGGAAGAGCAGCACCAAGCCTTTGAAACGCATAGCGAGTCCAATTCTGCTTTATTATATGAAAAGCTGCGAAATTCACTCATCAATGAAGATAGAAGTTGTGATTCCCCTTATGATGTGGAAGATGACAATATTGATTATGGTTTCGAAGATGCAATGCCTGATATCAATCCGCCAGATATGGATGATCCCTGTAATCATTATATGGACGAGTCTACGTGGTTAGGGAGTGAAAAGCATGATGCGGCTGCCCATTTTGATAAAGGTGAAACATATGAACCTGAATTTCCCTATTCGCATTCAAGTCAAGAACATTTTTGTCCCTCTCATCTTGACACACTCCTTGCAAGCATTGCTGAGAATCCTACTGAAATGGCCACTCGAGTCTCTACGTGGAAACAGAATATTGAACACAATTTGGAAGAGCAAGACAAACACCTTCCATTTGATATTCATGAATATTGCAAAGCGATTCGTGAAAAATTATCTGGTGAAGCTGACAAAGGCGGTGTAATGTCTTTCTCTGATGTTGTTGAAGGGCAGGAGAAGTTCGTTGTATCACGAAGTTTTACTGCTGTTCTTCAATTGGTGAACAATGAAGATGTGGAGCTGGAAGAGGACGAGGTTGATGGGGAGTCGATTGTCTATACTTCTGCGAACCCGTTCCATGTTCGGCTTATTCACCAAGACAAACGGGCGGATAAAACTCGGCATCAAACCTCAAGAAAGAGGTCCACATCTCCAGATAAGGTTGAAAATGGTTGGAATATAAACCACAAATCATCACACATCGATAAAACTCTTGAGGAATCTAGGGTGATGAGAAAATTGTCACGACAGAATTGCAAACTTCCTGTGAAACTGGGGAAGGTTGGTGGCATAAAATGCACTCCTGAAGGCAAGAGGAGGAGAAGAAGAGCTCGATTTGTTGAACCAGTTGACTGA 1869 42.16 MFLTALCAWDFFEGVAALLLQDSIQVYSRKVEYLYSLVLRALEFLSEKRQKDPLEGTSIEAEQDGSHEIAEDENDLFWVSEDVPVDTKNTLESTKEDAWLNQTVKPPANLVVLEGDCLDASGDNGELDSYLLASTSDIFQDFVLLDSCDAEAVQDFLNGGHKFGQSHNGGFRGSSTHRGFQSPSRRSGGSMQKSSVGKTQGANVARTPFSNHCFVSDPPSCDNFANENHEFDMDAGNPEPDDSNGSEDDYDPWKPLNPHEPGNLKIKPFRKVKAFKKNYVNSGKHESVAALFPLAKLQGPVSPEFAKLWEEQHQAFETHSESNSALLYEKLRNSLINEDRSCDSPYDVEDDNIDYGFEDAMPDINPPDMDDPCNHYMDESTWLGSEKHDAAAHFDKGETYEPEFPYSHSSQEHFCPSHLDTLLASIAENPTEMATRVSTWKQNIEHNLEEQDKHLPFDIHEYCKAIREKLSGEADKGGVMSFSDVVEGQEKFVVSRSFTAVLQLVNNEDVELEEDEVDGESIVYTSANPFHVRLIHQDKRADKTRHQTSRKRSTSPDKVENGWNINHKSSHIDKTLEESRVMRKLSRQNCKLPVKLGKVGGIKCTPEGKRRRRRARFVEPVD 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10957574 10961377 + Cp4.1LG03g11680.1 Cpe03g01352 467069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01352 622 MobiDBLite consensus disorder prediction 225 262 - -
Cpe03g01352 622 Pfam Condensin II complex subunit CAP-H2 or CNDH2, N-terminal 16 83 IPR009378 -
Cpe03g01352 622 MobiDBLite consensus disorder prediction 539 557 - -
Cpe03g01352 622 MobiDBLite consensus disorder prediction 163 202 - -
Cpe03g01352 622 Pfam Condensin II complex subunit CAP-H2 or CNDH2, C-term 252 542 IPR031737 -
Cpe03g01352 622 Pfam Condensin II complex subunit CAP-H2 or CNDH2, mid domain 105 249 IPR031719 -
Cpe03g01352 622 PANTHER CONDENSIN-2 COMPLEX SUBUNIT H2 16 613 IPR031739 GO:0030261
Cpe03g01352 622 MobiDBLite consensus disorder prediction 539 565 - -
Cpe03g01352 622 MobiDBLite consensus disorder prediction 168 202 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01352 K11490 NCAPH2; condensin-2 complex subunit H2 - csv:101203092 678.322
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01352 Cpe08g00172 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01352 Cpe-Chr3:10957574 Cpe08g00172 Cpe-Chr8:1203692 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g153 Blo01g00064 . . Bda08g00298 . . . . Cmo08g01213 Cmo17g00328 Cma06g01518 . . Car14g01429 . Cpe08g00172 Cpe03g01352 . . . . . . . Cla06g00463 Cam06g0495 Cec06g0498 Cco06g0497 Clacu06g0481 Cmu06g0482 Cre06g1255 Cone14ag0748 Cone15ag0754 . Cone4ag0137 . Csa06g01790 Chy11g01528 . . . . . Bpe05g00827 . . . Sed02g0010 . Cmo14g01648 Cma08g01239 Cma17g00341 . . . . Bhi12g02036 Tan06g2699 Cmetu02g1549 . Hepe03g0084 . Lcy12g0754 Cla05g00670 Cam05g0734 Cec05g0742 Cco05g0741 Clacu05g0727 Cmu05g0692 Cre05g0766 Lsi09g01450 Csa03g01487 Chy06g00724 Cme11g02031
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006083 1 1 1 1 0 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 2 1 1 1 1 1 1 6 1 0 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01352 Cpe_Chr03 FPKM 0.253314 0.385497 9.153832 9.154692 3.87546 3.909477 3.904093 0.672578 0.876404 0.8018