Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01357 ATGTCCATAAGCTGCATGGCTACTGCTTCCTCCTCTTCTCCCACTCAATGCCCACCAGGTGTTTGTGAAAATGCGCGACTGGACCTGAACTCCATAAGGGGTCTTGTTGTCTCTATCAATCAGTATATTCATGAATTCTTGAGCAATGCTGAGGCTAGAACTGCTGTCAAATTGAGATGTATATCCAAGCTAAGAAACCATAAACACGAGTATTTTGAATTCTTGGAACAATCCATCATTTCAAATCTTTACTGGGGTGTTGAGAACATTGAAGATGCAGTTCAAACGAGCAGTTCTGAAGTGAGGGCCACTAAGCTTCAAACTGCTGAACAAATGCTTCAGGTCCCAGCACTGCTTGACGAGCATGGTGAGACGTCAGGAATGGATAATCGTTATTTAGTTTGCTGCTCTTACTTCTATCTTTCCCTGGTCAAGAATCTTCAAGGGGACGAGTGGCAGGTTGCTCTGCACTTCCTTCAATCCCTGCTGGTTTCTCCAAGATTGGTTCTCACCGAGTTTGCTCAAGAATTTTGCTACAGCCTTCTTCTTTCTTTTGCTACATGTTCGAGGCAAGAAAATTGTACAAGTATGAGGTCCGATTCTTGTGTAGAATTTGGCGAGGGTGATTTTGGTGAATCAACTGTAAGACAGGTAGCTAGAAAATACAAGGACTGGCTAATGTATTATCAGGTTATGTCATACGGAGAGACTCGCCAGTGGCAGCAGCAGGGAAGCAGCAGTATGTTTTCTTCTGAAGATGGATCACATTCCTTGCACGGCTCATTTTCCAGGATTGAAGATTCAAAGGCAATTGATTGCGGGCTTGCCCAGCCAACTGTTTCCCATTATGACATTATATCGCCACTTGATCATATTGATGTATTTCAAGATAAAACAAACACGTCGCAAGATGTTCCACGATGTGAAGAATTGGGGAATTCCGGAAAAAATTTGGGTCTCATCCCAGAACCTCAATTAAATGATGGGGGATTCTGGAGAGATTCTAGTACCAAGTTCATTGGAGACCTGTTGAAGGATTCCCATCTCGGTTCACCAACTTCATTATTCTCATCAATGAACGATTCCGAAAGTGACAGTGATTTTGAGGCAGGTATGAACTACACTAATCACTCTAAGAGAAGCGCACAAGAAGACATGCCGGAAAACTTTTATCAGAAGCTGCGTTATGCTCGCTCCAAATCTGACACAGAACAGAGTTTGATATCATTGACCAGTGCTTCTCTAAGTAGGGTGCAGGAACATTACATTGAAGCAAACATGATGAAATCCATTTCAAACAAATTCAATGATTACAAGTTATGTAGCGAAGAACAAAAAGACCTAGAACCTCAGATCCTCCAAAATTGTTTTGAAGATAGTGAACCAAAAGAATTGTTAGTAAACCCATGCAAATTACAGACTTTTGATAGTGCTTTACCTTTAGCGCTCGGTCAGGGTTCGACCTGTCAGATTAGTAAGCAGAATAGTGCTAAAGGGCAATTATATCATGCAAATAGCAGAAAAGATTCAAAGAGTGAAATATTGGGACTTGTAGAGAAAGCGATATCAAGATTATGTTTCTCAGAAGGATTAGGAAACTACGATGACGAGTATGCCGTGGAAGTTTCAACGGTTTACAAAATGTTGAATAACAAAACGGGAGTACAATACACCATGTTAAAGGATTTGATAATGGATCAATTGGTGACAGGCATTTCAACTTCTAAAGAGGAAAAGGTTATAAGGGCATCAGTTTCTCTGCTCACAACTATAATTTCCGAGAACAATTCGGTTATAGAAGATATCAAGAAGAAGGGTTTACAGTTATGTGATTTGGCTACTGCTCTAAAACAGAATGTTCATGAGGCTGCAATTCTTATCTACCTCATCAGTCCATCCCCAAGGGAAATCAAGTCCTTAGAGCTTCTACCTGTTCTGGTGGAGATCATAAGCACCTCAAGATGTTATAATACTTGGTCACCACCACTTATGTTGACTCCTCCTGCAGCATCAATGATGATCATTGAAGTAATGGTAACTGCGTTTGACGAGGACACAAATAAGATGCATTTGGTAGAAATCAGCTCACCAAGTGTTCTTTGTGGGCTTCTAGAAGTTGCAAGAACCAACAATGTGGAAGGATTGGTGTCTCTAGGCAGTATTCTTGTAAAATGCATGCAACTTGATGGAGAGTGCAGAAGCTATATATCAAAATTCATCTCAGTGGCTCCATTTCTCTGTCTCTTACAAAGTGATAAGAAGGAAGCAGTACATATCACACTTCAAGTATTCAATGAAATCCTTCGTGTTCCTAGGTCTTCTGCCATTAGCTTGTTGCAAAGGATTAAGAATGAAGGGGGAAATGACATCATTCACATACTAATGCTTTGTGTCAATCATTTGCAAACTGAATATCAACTTTTGGCTGCAAATTTATTGATTCAATTACTTGTACTGGACAACGGTTCCACAACGAGCTTCTTAAAAGAAGAGGCTGTACATGTCCTTCTCAGGTCAGTGGCATGCGAAGAAACCTCTGCTATGCAGCTGTTGTCTGCATCGATTTTGTCAACTCTTGGTGGAACGTTTGCTTGGACAGGAGAACCATACACAGTTGCATGGTTGCTTAAAAAAGTTGGTTTGAGTTCTGATCATCAGAACATGATCAAATCGTTCAATTGGCTAGACCAAAGCTTGCAGGATGCTGGCATGGACTCATGGTGCAGTCTGATGGCCAGAAACATCATCTGTATCGGGGAACCCGTCTTTCATGCTTTAGAAAAGGGTTTAAAGAGCAACATAAAGAAGGTTTCTAGGGACTGTTTGACAACAATTGCATGGCTTGGATGTGAGATTGCAAAGAGTCCAAGTAGCATTAGATGTTCTGCTTGTGAGATCTTACTCAGTAGAATTGAGCTGTTCTTGCATCCCGGAGTAGAACTCGAAGAAAGGCTTCTGGCATGTCTCTGCATCTTCAACTATACGTCTGGAAAAGGGATGCAAAAGCTTACTAATTTCTCTGAAGGAGTACGTGAGTCACTAAGACGTCTTTCGCATATAACTTGGATGGCAGAAGAGTTGCATCAAGTAGCAGATTATCTTATGCCCAATAATTCACGAATTTCGTGCGTGCACACGCAAGTTCTAGAGCTGGGTTTCAACAGCAGTGGAGCTGTATGTGCCCTCATCTTTTACAAAGGTCTTCTTTTCGGTGGATACTCAGATGGTTCAATTAAGGTGTGGAACATCAAGGGACAATCGGCATCACTTCTATGGGACATAAAGAAGCATAGAAAAGCAGTAACATGTTTTTCGCATTTTGAATCTGGGGAGAGTCTTCTAAGCGGATCTTCCGATAAAACTATTCGAGTTTGGAAAATGATCCAGGGAAGATTGGAGTGCATCGAAGTCATAGAGTCCAAGGAACAAATCCAACATTTAGGGGCATATGGACAAATAATCTTTGCAATTACACATGGCCATGGCTTGAAGGTGATTGATGCATCAAGAACAACAAAAGTTCTTTTCAAGAGTAAGAATTTGAAGTGCATGAAGGTGGTTCAAGGAAGAGTTTACGCAGGCTGCACCGATTCGAGCATACAGCCCAAAATGAATATTGTAACTGGTAAAGGAGACGTCGTGCAAGCGATGAGTGTCGTTGAAGATTTCGTGTACATAATCTGTAAATCTTCAGTAAGCAGCATTCAGATATGGTTGAGAAAGGCACAGCACAAAGTGGGGAGAGTTTCAGCTAGTAGCAGGATAACATGTCTGCTTACAGCCAATGACATGGTTCTTTGTGGCACAGAGACGGGCAAAATTAAGCCCAAAATGAATATTGTAACTGGTAAAGGAGACGTCGTGCAAGCGATGAGTGTCGTTGAAGATTTCGTGTACATAATCTGTAAATCTTCAGTAAGCAGCATTCAGATATGGTTGAGAAAGGCACAGCACAAAGTGGGGAGAGTTTCAGCTAGTAGCAGGATAACATGTCTGCTTACAGCCAATGACATGGTTCTTTGTGGCACAGAGACGGGCAAAATTAAG 4047 41.39 MSISCMATASSSSPTQCPPGVCENARLDLNSIRGLVVSINQYIHEFLSNAEARTAVKLRCISKLRNHKHEYFEFLEQSIISNLYWGVENIEDAVQTSSSEVRATKLQTAEQMLQVPALLDEHGETSGMDNRYLVCCSYFYLSLVKNLQGDEWQVALHFLQSLLVSPRLVLTEFAQEFCYSLLLSFATCSRQENCTSMRSDSCVEFGEGDFGESTVRQVARKYKDWLMYYQVMSYGETRQWQQQGSSSMFSSEDGSHSLHGSFSRIEDSKAIDCGLAQPTVSHYDIISPLDHIDVFQDKTNTSQDVPRCEELGNSGKNLGLIPEPQLNDGGFWRDSSTKFIGDLLKDSHLGSPTSLFSSMNDSESDSDFEAGMNYTNHSKRSAQEDMPENFYQKLRYARSKSDTEQSLISLTSASLSRVQEHYIEANMMKSISNKFNDYKLCSEEQKDLEPQILQNCFEDSEPKELLVNPCKLQTFDSALPLALGQGSTCQISKQNSAKGQLYHANSRKDSKSEILGLVEKAISRLCFSEGLGNYDDEYAVEVSTVYKMLNNKTGVQYTMLKDLIMDQLVTGISTSKEEKVIRASVSLLTTIISENNSVIEDIKKKGLQLCDLATALKQNVHEAAILIYLISPSPREIKSLELLPVLVEIISTSRCYNTWSPPLMLTPPAASMMIIEVMVTAFDEDTNKMHLVEISSPSVLCGLLEVARTNNVEGLVSLGSILVKCMQLDGECRSYISKFISVAPFLCLLQSDKKEAVHITLQVFNEILRVPRSSAISLLQRIKNEGGNDIIHILMLCVNHLQTEYQLLAANLLIQLLVLDNGSTTSFLKEEAVHVLLRSVACEETSAMQLLSASILSTLGGTFAWTGEPYTVAWLLKKVGLSSDHQNMIKSFNWLDQSLQDAGMDSWCSLMARNIICIGEPVFHALEKGLKSNIKKVSRDCLTTIAWLGCEIAKSPSSIRCSACEILLSRIELFLHPGVELEERLLACLCIFNYTSGKGMQKLTNFSEGVRESLRRLSHITWMAEELHQVADYLMPNNSRISCVHTQVLELGFNSSGAVCALIFYKGLLFGGYSDGSIKVWNIKGQSASLLWDIKKHRKAVTCFSHFESGESLLSGSSDKTIRVWKMIQGRLECIEVIESKEQIQHLGAYGQIIFAITHGHGLKVIDASRTTKVLFKSKNLKCMKVVQGRVYAGCTDSSIQPKMNIVTGKGDVVQAMSVVEDFVYIICKSSVSSIQIWLRKAQHKVGRVSASSRITCLLTANDMVLCGTETGKIKPKMNIVTGKGDVVQAMSVVEDFVYIICKSSVSSIQIWLRKAQHKVGRVSASSRITCLLTANDMVLCGTETGKIK 1349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10983701 10992563 + Cp4.1LG03g11670.1 Cpe03g01357 467074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01357 1349 ProSiteProfiles Trp-Asp (WD) repeats profile. 1094 1127 IPR001680 GO:0005515
Cpe03g01357 1349 PANTHER OS04G0584500 PROTEIN 1201 1275 - -
Cpe03g01357 1349 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1201 1275 - -
Cpe03g01357 1349 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1094 1127 - -
Cpe03g01357 1349 SUPERFAMILY ARM repeat 559 1017 IPR016024 -
Cpe03g01357 1349 Pfam WD domain, G-beta repeat 1093 1126 IPR001680 GO:0005515
Cpe03g01357 1349 PANTHER OS04G0584500 PROTEIN 11 1201 - -
Cpe03g01357 1349 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 11 1201 - -
Cpe03g01357 1349 SUPERFAMILY WD40 repeat-like 1055 1348 IPR036322 GO:0005515
Cpe03g01357 1349 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1274 1349 - -
Cpe03g01357 1349 SMART WD40_4 1087 1126 IPR001680 GO:0005515
Cpe03g01357 1349 SMART WD40_4 1042 1082 IPR001680 GO:0005515
Cpe03g01357 1349 PANTHER OS04G0584500 PROTEIN 1274 1349 - -
Cpe03g01357 1349 Gene3D - 989 1279 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01357 - - - csv:101205639 2190.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01357 Cpe-Chr3:10983701 Cpe04g01117 Cpe-Chr4:9667399 3.91E-55 dispersed
Cpe03g01357 Cpe-Chr3:10983701 Cpe09g00699 Cpe-Chr9:6189378 4.33E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g186 Blo01g00069 . . Bda08g00295 . . . Bma05g01030 . . . Cma14g01615 . Car14g01438 . . Cpe03g01357 . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00830 . . . . . Cmo14g01653 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009269 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01357 Cpe_Chr03 FPKM 8.743003 9.031466 1.38304 0.575613 5.552066 7.069173 4.737502 0.181701 0.153986 0.0