Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01367 ATGGCGGACGCCGACTCTTCCTCTCCCTCCGCCGCTGCCCCAGCTCCTCTATCGGCTAAAAATGAGAATCTAACTCCCATTGGATCGAAAATTTCGGAATTGAACGAATCAAGAGCGGAGTTGCTTAATAGAATTCAATCTCTTAAGCAGGATCTTCAGAATTGGAGGTCAAAGTTAGACACGCAAGTTAATACCTACCGCAGTGAACTCTCTGAACTCAAGAAATCACTTAATGTTGAGGTCGAGCACCTTCGAACGGAATTCCAAGAACTAAGGACTACCCTTCAGCAGCAACAAGAAGACGTGACTACCAGCCTGAGGAACTTGGGTCTTCAGGATGTTTCTGTGGACAATAACGAGACTCGACATCAACATCCAGCAGAAATCAGCGACAAGGAAGATGCAGACGAGGCAACGAAGGAAGGTCGTGGCTCGACGGAGGAAAAGGGGAATGAAGTTGGAAATTAA 468 47.01 MADADSSSPSAAAPAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLDTQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNETRHQHPAEISDKEDADEATKEGRGSTEEKGNEVGN 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11032785 11035007 - Cp4.1LG03g11360.1 Cpe03g01367 467084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01367 155 MobiDBLite consensus disorder prediction 1 24 - -
Cpe03g01367 155 MobiDBLite consensus disorder prediction 109 155 - -
Cpe03g01367 155 Gene3D - 32 100 - -
Cpe03g01367 155 PANTHER UVEAL AUTOANTIGEN WITH COILED-COIL/ANKYRIN 1 141 - -
Cpe03g01367 155 MobiDBLite consensus disorder prediction 118 155 - -
Cpe03g01367 155 SUPERFAMILY Apolipoprotein A-I 33 104 - -
Cpe03g01367 155 Coils Coil 31 101 - -
Cpe03g01367 155 PANTHER UVEAL AUTOANTIGEN WITH COILED-COIL/ANKYRIN 1 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01367 - - - csv:101223088 232.261
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01367 Cpe-Chr3:11032785 Cpe08g00190 Cpe-Chr8:1278294 5.24E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g318 . . . . . . . . . . . . . . . . Cpe03g01367 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007952 0 2 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 0 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01367 Cpe_Chr03 FPKM 21.228224 22.163837 18.73278 21.522657 13.317801 12.782181 14.165321 14.740009 14.285144 13.908818