Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01374 ATGGCCCCGTCAAGAAAGTCCAGAAGTGTTAATAAGCGGTTATCTTCTGCTAATGAGGCCTTCTCAAGTAAATATGTGGAAGATGCTAGCAAAAGCAAGCAGAAGAAGAGGAAATTTGCTGACCTGTTAGGGCCTCAATGGAGCAAGGATGAGGTTGAGCAGTTCTATGAAGCATATCGTAAATATGGAAAAGATTGGAAGAAGGTAGCTGCTGCAGTAAGGAACCGTTCTACAGAAATGGTCGAGGCCCTTTTCACCATGAATAGGGCCTATTTATCACTTCCAGAGGGCACTGCTTCAGTTGTTGGGTTAATTGCAATGATGACTGATCACTACAGCGTACTGATAAATTGCCAGAGAGACAGTGAAAGTGAACAAGAAAGCAATGAGAATTCTGGAGCAAGAAGAAAACCTCAAAAGCGACTGCGTGGAAAGTCACAAAATAACAACTCTAAAGGATTGGATGCACATTTTGGAGATGCTTCACAATCACAGTCATTTCCAACAAATTATGGCTGCCTGTCATTGTTGAAGAAGAGGCGTTCTGGTATTAAACCTCATGCTGTTGGGAAACGAACTCCACGCGTTCCTGTATCATATTCTTATGATAAAGATAGTAGAGAGAGGTTTTTTTCACCCTCCAGGCACAATAGCAAGCCAAGGGTTGATGATCCAAATGATGATGATGTTGCTCATGAGATAGCTTTAGTTTTAACAGAGGCTTCACAACGAGATGGTTCTCCACAACTTTCACAAACACCAAATCCAAAAATTGAAGGTCATGTACTTTCACCTACCCGAAATGACAGGATGCAAAGTGAATCAGGCATGATGAATACGAAGTTTCGATGTAGTGAAATGGATGAAGGTGGTTGCGAATTAAGCTTAGGAAGCACTGGTGCTGATAATGCGGACTATGACCTGGGGAAAAATTCTCGTGAGATTCAGAGAAAGGGTAAAAGGTACCATGGAAAGAAGCCAGAAGTTGAAGAAAATGAATGTTCAGCATTTGATGCACTGCAAACTTTAGCCGATTTGTCTCTAATGATGCCTGACGCAAATGCTGAGACTGAGCCTTCTGCAAAGGTTAAAGAGGAAAATCTTGATGTCATGCACAAGTCTAAAATAAAAGGGAATCATTCAGTTGCTGGAGCTGAAATCTCTGCTCTCAAAACATCTAAAAAGGGAAAAGCTTTTGGCAATAATGTTGGTCCTATTCTGGAATCTGAGAGAATTCAAGGATCCAATAACGGTAATCGAAAAAGGAAACTGAAGTCTTCTCCATTTAAGATCTCAGCTAAAGATGAAGTTAACAGTGATTCTCGTGTCGGTGACACTCTGAAAATCAAGGTCCACAAGGAAGTAAGAATCTGGGTGAGGGGTGGGGGCACTGGCTTCAAGGAGGTGGTAGTGTCTGAATTGAAGCGCTTGAATGATGAGGTGTTGGAAAACCAAATAAATGGAGACAACTTGCTCAAGGATTCAGAGAACTTTAAGAAGCAATATGCTGCTGTGCTATTACAGTTGAATGAAGTTAATGAACAGGCAGGAGTTTCCTCTGCTTTGTATTGCTTGAGGCAGCGCAATACATATCAAGGGACTTTACCATTGATGTTCCTCAAGCCAGTGCATGATATGGGCGACTCTTGCTCTCATGCTCAAGAACCCAGTTCCCATGTGGCTGAAATTGTGGGAAGTTCCAGAGCAAAGGCTCAAACAATGATCGATGAGGCAATGCAGGCAATTCTAGCTCTGAAAAAAGGAGAAAGTAATTTGGAGAATATTGAAGAAGCCATTGATTTTGTAAGTAATAGACTCTCAGTGGATGATTTGGCCTTGCCAAGTGTGAGATCAACAGCTGCAGATACTAGTAATTCCCCTCCAGTATCTCAGAATCATTTCAACGTGTGTACATCAAACCCATCTATTGCTGATCATGTAGTTGGTCCCAAGTCCAATGGCCTATCCGACAAGACTGAAGTGGAGATCCCTTCAGAACTTATTGCACACTGTGTAGCCACTTTACTCATGATTCAGAAATGCACAGAAAGACAGTTTCCACCATCTGATGTTGCTCAGGTATTGGATTCTGCCGTCAGTGGTTTGCAGCCTTGTTGTCCTCAGAACCTTCCACTATATGCGGAGATCCAGAAATGCATGGGAATTATAAGGAGCCAGATACTCGCGCTCATACCCACATAG 2202 42.33 MAPSRKSRSVNKRLSSANEAFSSKYVEDASKSKQKKRKFADLLGPQWSKDEVEQFYEAYRKYGKDWKKVAAAVRNRSTEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYSVLINCQRDSESEQESNENSGARRKPQKRLRGKSQNNNSKGLDAHFGDASQSQSFPTNYGCLSLLKKRRSGIKPHAVGKRTPRVPVSYSYDKDSRERFFSPSRHNSKPRVDDPNDDDVAHEIALVLTEASQRDGSPQLSQTPNPKIEGHVLSPTRNDRMQSESGMMNTKFRCSEMDEGGCELSLGSTGADNADYDLGKNSREIQRKGKRYHGKKPEVEENECSAFDALQTLADLSLMMPDANAETEPSAKVKEENLDVMHKSKIKGNHSVAGAEISALKTSKKGKAFGNNVGPILESERIQGSNNGNRKRKLKSSPFKISAKDEVNSDSRVGDTLKIKVHKEVRIWVRGGGTGFKEVVVSELKRLNDEVLENQINGDNLLKDSENFKKQYAAVLLQLNEVNEQAGVSSALYCLRQRNTYQGTLPLMFLKPVHDMGDSCSHAQEPSSHVAEIVGSSRAKAQTMIDEAMQAILALKKGESNLENIEEAIDFVSNRLSVDDLALPSVRSTAADTSNSPPVSQNHFNVCTSNPSIADHVVGPKSNGLSDKTEVEIPSELIAHCVATLLMIQKCTERQFPPSDVAQVLDSAVSGLQPCCPQNLPLYAEIQKCMGIIRSQILALIPT 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11067475 11082534 - Cp4.1LG03g11420.1 Cpe03g01374 467091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01374 733 SUPERFAMILY Homeodomain-like 42 89 IPR009057 -
Cpe03g01374 733 Pfam Myb-like DNA-binding domain 46 81 IPR001005 -
Cpe03g01374 733 PANTHER LIN-9 468 733 IPR010561 GO:0006351|GO:0017053
Cpe03g01374 733 MobiDBLite consensus disorder prediction 409 429 - -
Cpe03g01374 733 ProSiteProfiles SANT domain profile. 42 79 IPR017884 -
Cpe03g01374 733 PANTHER LIN-9 332 440 IPR010561 GO:0006351|GO:0017053
Cpe03g01374 733 MobiDBLite consensus disorder prediction 120 166 - -
Cpe03g01374 733 PANTHER LIN-9 1 338 IPR010561 GO:0006351|GO:0017053
Cpe03g01374 733 Coils Coil 585 605 - -
Cpe03g01374 733 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 468 733 IPR028306 -
Cpe03g01374 733 MobiDBLite consensus disorder prediction 123 137 - -
Cpe03g01374 733 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 338 IPR028306 -
Cpe03g01374 733 MobiDBLite consensus disorder prediction 240 274 - -
Cpe03g01374 733 MobiDBLite consensus disorder prediction 144 166 - -
Cpe03g01374 733 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 332 440 IPR028306 -
Cpe03g01374 733 SMART sant 43 91 IPR001005 -
Cpe03g01374 733 CDD SANT 47 81 IPR001005 -
Cpe03g01374 733 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 81 IPR017930 -
Cpe03g01374 733 Gene3D - 2 99 - -
Cpe03g01374 733 MobiDBLite consensus disorder prediction 242 259 - -
Cpe03g01374 733 MobiDBLite consensus disorder prediction 206 228 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01374 - - - bhj:120080265 689.878
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01374 Cpe08g00199 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01374 Cpe-Chr3:11067475 Cpe07g00902 Cpe-Chr7:8074914 9.36E-18 dispersed
Cpe03g01374 Cpe-Chr3:11067475 Cpe08g00199 Cpe-Chr8:1324815 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g335 . . . . . Bpe14g01136 . . . . Cma06g01485 Cma14g01632 Car06g01277 Car14g01458 . Cpe08g00199 Cpe03g01374 Bhi01g00974 . . . Hepe05g1463 . . . . . . . . . . . Cone7ag0162 Cone4ag0158 Lsi05g01524 . . Cme06g00712 Blo02g00515 . Bda11g00533 Bda13g00178 . Bpe13g00656 . Bma06g01509 . Cmo06g01480 Cmo14g01669 . . . . . . . . . . . . . Cla05g00634 Cam05g0695 Cec05g0708 Cco05g0704 Clacu05g0690 Cmu05g0657 Cre05g0729 . Csa03g01442 Chy06g00683 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003565 1 5 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 4 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49255 PF00249 Myb_DNA-binding 8.30E-08 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01374 Cpe_Chr03 FPKM 15.661184 16.586857 14.826885 16.424616 10.996717 12.378875 12.54331 14.608857 14.20091 15.196404