Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe03g01375 | ATGAACCCGTACGGTCACTCTATGGAACCCTCTCACTCCGATCCTTCGCCTGAATGGACCGTTTCCGGACCCGATACTGCTCATGGAGAGCCGCTTTGGCCTTTGGGATCGAGGGAGCGGGAATCGTACCCTGAACGTCCTGAAGAGACTGATTGTATATATTACCTACGTACGGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCTCGTGAGCGTAACGCGATTTTAGGAGGTTCGAGACTTGCTGGAAGAGAGTATCCCGAACGAATAGGCCAGCCCGTGTGCCAGTACTATATGAGGACAGGAATGTGCAAATTTGGCGCTTCCTGTAAGTATCACCATCCTCAGCAGGAAAGAGGTTCTCTTAGCCCCGTCTCACTGAATTTCTATGGCTATCCACTACGACCGGGTGAAAAGGAGTGTTCTTATTATTTGAAGAATTGGCAGTGTAAGTTTGGTGCTACGTGCAAATTTCATCACCCAGAACCGGCTGGCTTGCAGTTTCCAGCACCATCACCTATTCAGGTTACACCAGTGCCTGCACCCTCTGTTTATCCTCCGGTGCAATCTCCATCTGCTCATTCGTCACAGCAATATGGAGTAATACTTGCAAGGCCTTCATTGCTGTCAAGCCCATATGTTCCCGGCCCTTATGGTCCTATGTTGGTTTCCCCAGGCGTTTTCCCAAGTTGGAGTCCTTACCCAACACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTGTTGGATCAGGGCCACTTTATGGTATGGCACACGTTTCACCTTCTGCACCTGTCTATGCCGGATCCTATCAGCCCATGCCATCTGCTGGTCCCTCTAGTACTAGCCAGAAGGAGCACTCATTTCCAGAAAGACCTGGCCAACCAGAGTGTCAATATTACATGAGAACAGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCGCCAGAATTCGTTACTTCAAGTCCAGGTGTTGTCCTTAGCCAGCTAGGTCTTCCTCTACGCCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGCAAGTTTGGCCCTGCGTGCAAATTCGACCACTCCATGGATCGACTTAGTTATAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCAGTAGCCGGTACTTTAGCCCCATCATCCTCATCTTCAGAGTTGAAGCCTGAACATTTTTCGGGATCCAGAAAGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACCTCTACTAGTGGATTGGTTGGTTCAACTACATCGAGGACAGAAATGTATTCTCATTCAAGTGCTCAACGATCTTCCCAAACTTCTGTCCCGTCACAGAGCAGTACCTCCAGCACCACCAGTGTCGAAGGTCGTACTTGA | 1428 | 49.23 | MNPYGHSMEPSHSDPSPEWTVSGPDTAHGEPLWPLGSRERESYPERPEETDCIYYLRTGFCGYGSRCRFNHPRERNAILGGSRLAGREYPERIGQPVCQYYMRTGMCKFGASCKYHHPQQERGSLSPVSLNFYGYPLRPGEKECSYYLKNWQCKFGATCKFHHPEPAGLQFPAPSPIQVTPVPAPSVYPPVQSPSAHSSQQYGVILARPSLLSSPYVPGPYGPMLVSPGVFPSWSPYPTPMSPVASPSAQPSVGSGPLYGMAHVSPSAPVYAGSYQPMPSAGPSSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPEFVTSSPGVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMDRLSYSPSASSLADMPVAPYPVGSVAGTLAPSSSSSELKPEHFSGSRKDSNPSRMSSSMSTSTSGLVGSTTSRTEMYSHSSAQRSSQTSVPSQSSTSSTTSVEGRT | 475 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 11100001 | 11104320 | + | Cp4.1LG03g11290.1 | Cpe03g01375 | 467092 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe03g01375 | 475 | ProSiteProfiles | Zinc finger C3H1-type profile. | 296 | 324 | IPR000571 | GO:0046872 | |
Cpe03g01375 | 475 | Gene3D | - | 123 | 171 | - | - | |
Cpe03g01375 | 475 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cpe03g01375 | 475 | SUPERFAMILY | CCCH zinc finger | 300 | 323 | IPR036855 | GO:0046872 | |
Cpe03g01375 | 475 | SUPERFAMILY | CCCH zinc finger | 140 | 166 | IPR036855 | GO:0046872 | |
Cpe03g01375 | 475 | SUPERFAMILY | CCCH zinc finger | 47 | 74 | IPR036855 | GO:0046872 | |
Cpe03g01375 | 475 | ProSiteProfiles | Zinc finger C3H1-type profile. | 92 | 120 | IPR000571 | GO:0046872 | |
Cpe03g01375 | 475 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 95 | 119 | IPR000571 | GO:0046872 | |
Cpe03g01375 | 475 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 140 | 165 | IPR000571 | GO:0046872 | |
Cpe03g01375 | 475 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 345 | 369 | IPR000571 | GO:0046872 | |
Cpe03g01375 | 475 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 298 | 323 | IPR000571 | GO:0046872 | |
Cpe03g01375 | 475 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 49 | 73 | IPR000571 | GO:0046872 | |
Cpe03g01375 | 475 | MobiDBLite | consensus disorder prediction | 275 | 299 | - | - | |
Cpe03g01375 | 475 | Gene3D | - | 341 | 389 | - | - | |
Cpe03g01375 | 475 | Gene3D | - | 285 | 333 | - | - | |
Cpe03g01375 | 475 | Gene3D | - | 42 | 122 | - | - | |
Cpe03g01375 | 475 | ProSiteProfiles | Zinc finger C3H1-type profile. | 138 | 166 | IPR000571 | GO:0046872 | |
Cpe03g01375 | 475 | SUPERFAMILY | CCCH zinc finger | 346 | 373 | IPR036855 | GO:0046872 | |
Cpe03g01375 | 475 | MobiDBLite | consensus disorder prediction | 397 | 475 | - | - | |
Cpe03g01375 | 475 | SUPERFAMILY | CCCH zinc finger | 94 | 122 | IPR036855 | GO:0046872 | |
Cpe03g01375 | 475 | MobiDBLite | consensus disorder prediction | 278 | 293 | - | - | |
Cpe03g01375 | 475 | MobiDBLite | consensus disorder prediction | 418 | 475 | - | - | |
Cpe03g01375 | 475 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Cpe03g01375 | 475 | ProSiteProfiles | Zinc finger C3H1-type profile. | 46 | 74 | IPR000571 | GO:0046872 | |
Cpe03g01375 | 475 | PANTHER | PROTEIN PHOSPHATASE RELATED | 9 | 454 | - | - | |
Cpe03g01375 | 475 | ProSiteProfiles | Zinc finger C3H1-type profile. | 342 | 370 | IPR000571 | GO:0046872 | |
Cpe03g01375 | 475 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 | 9 | 454 | - | - | |
Cpe03g01375 | 475 | SMART | c3hfinal6 | 296 | 323 | IPR000571 | GO:0046872 | |
Cpe03g01375 | 475 | SMART | c3hfinal6 | 342 | 369 | IPR000571 | GO:0046872 | |
Cpe03g01375 | 475 | SMART | c3hfinal6 | 92 | 119 | IPR000571 | GO:0046872 | |
Cpe03g01375 | 475 | SMART | c3hfinal6 | 138 | 165 | IPR000571 | GO:0046872 | |
Cpe03g01375 | 475 | SMART | c3hfinal6 | 46 | 73 | IPR000571 | GO:0046872 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe03g01375 | Cpe08g00200 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g01375 | Cpe-Chr3:11100001 | Cpe05g01531 | Cpe-Chr5:10541426 | 7.76E-76 | dispersed | |
Cpe18g00257 | Cpe-Chr18:4223686 | Cpe03g01375 | Cpe-Chr3:11100001 | 7.71E-17 | transposed | |
Cpe03g01375 | Cpe-Chr3:11100001 | Cpe08g00200 | Cpe-Chr8:1347667 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49256 | PF00642 | zf-CCCH | 1.30E-07 | CL0537 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe03g01375 | - | - | csv:101221033 | 825.854 |