Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01375 ATGAACCCGTACGGTCACTCTATGGAACCCTCTCACTCCGATCCTTCGCCTGAATGGACCGTTTCCGGACCCGATACTGCTCATGGAGAGCCGCTTTGGCCTTTGGGATCGAGGGAGCGGGAATCGTACCCTGAACGTCCTGAAGAGACTGATTGTATATATTACCTACGTACGGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCTCGTGAGCGTAACGCGATTTTAGGAGGTTCGAGACTTGCTGGAAGAGAGTATCCCGAACGAATAGGCCAGCCCGTGTGCCAGTACTATATGAGGACAGGAATGTGCAAATTTGGCGCTTCCTGTAAGTATCACCATCCTCAGCAGGAAAGAGGTTCTCTTAGCCCCGTCTCACTGAATTTCTATGGCTATCCACTACGACCGGGTGAAAAGGAGTGTTCTTATTATTTGAAGAATTGGCAGTGTAAGTTTGGTGCTACGTGCAAATTTCATCACCCAGAACCGGCTGGCTTGCAGTTTCCAGCACCATCACCTATTCAGGTTACACCAGTGCCTGCACCCTCTGTTTATCCTCCGGTGCAATCTCCATCTGCTCATTCGTCACAGCAATATGGAGTAATACTTGCAAGGCCTTCATTGCTGTCAAGCCCATATGTTCCCGGCCCTTATGGTCCTATGTTGGTTTCCCCAGGCGTTTTCCCAAGTTGGAGTCCTTACCCAACACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTGTTGGATCAGGGCCACTTTATGGTATGGCACACGTTTCACCTTCTGCACCTGTCTATGCCGGATCCTATCAGCCCATGCCATCTGCTGGTCCCTCTAGTACTAGCCAGAAGGAGCACTCATTTCCAGAAAGACCTGGCCAACCAGAGTGTCAATATTACATGAGAACAGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCGCCAGAATTCGTTACTTCAAGTCCAGGTGTTGTCCTTAGCCAGCTAGGTCTTCCTCTACGCCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGCAAGTTTGGCCCTGCGTGCAAATTCGACCACTCCATGGATCGACTTAGTTATAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCAGTAGCCGGTACTTTAGCCCCATCATCCTCATCTTCAGAGTTGAAGCCTGAACATTTTTCGGGATCCAGAAAGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACCTCTACTAGTGGATTGGTTGGTTCAACTACATCGAGGACAGAAATGTATTCTCATTCAAGTGCTCAACGATCTTCCCAAACTTCTGTCCCGTCACAGAGCAGTACCTCCAGCACCACCAGTGTCGAAGGTCGTACTTGA 1428 49.23 MNPYGHSMEPSHSDPSPEWTVSGPDTAHGEPLWPLGSRERESYPERPEETDCIYYLRTGFCGYGSRCRFNHPRERNAILGGSRLAGREYPERIGQPVCQYYMRTGMCKFGASCKYHHPQQERGSLSPVSLNFYGYPLRPGEKECSYYLKNWQCKFGATCKFHHPEPAGLQFPAPSPIQVTPVPAPSVYPPVQSPSAHSSQQYGVILARPSLLSSPYVPGPYGPMLVSPGVFPSWSPYPTPMSPVASPSAQPSVGSGPLYGMAHVSPSAPVYAGSYQPMPSAGPSSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPEFVTSSPGVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMDRLSYSPSASSLADMPVAPYPVGSVAGTLAPSSSSSELKPEHFSGSRKDSNPSRMSSSMSTSTSGLVGSTTSRTEMYSHSSAQRSSQTSVPSQSSTSSTTSVEGRT 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11100001 11104320 + Cp4.1LG03g11290.1 Cpe03g01375 467092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01375 475 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Cpe03g01375 475 Gene3D - 123 171 - -
Cpe03g01375 475 MobiDBLite consensus disorder prediction 1 20 - -
Cpe03g01375 475 SUPERFAMILY CCCH zinc finger 300 323 IPR036855 GO:0046872
Cpe03g01375 475 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872
Cpe03g01375 475 SUPERFAMILY CCCH zinc finger 47 74 IPR036855 GO:0046872
Cpe03g01375 475 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Cpe03g01375 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Cpe03g01375 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 165 IPR000571 GO:0046872
Cpe03g01375 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 345 369 IPR000571 GO:0046872
Cpe03g01375 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Cpe03g01375 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Cpe03g01375 475 MobiDBLite consensus disorder prediction 275 299 - -
Cpe03g01375 475 Gene3D - 341 389 - -
Cpe03g01375 475 Gene3D - 285 333 - -
Cpe03g01375 475 Gene3D - 42 122 - -
Cpe03g01375 475 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Cpe03g01375 475 SUPERFAMILY CCCH zinc finger 346 373 IPR036855 GO:0046872
Cpe03g01375 475 MobiDBLite consensus disorder prediction 397 475 - -
Cpe03g01375 475 SUPERFAMILY CCCH zinc finger 94 122 IPR036855 GO:0046872
Cpe03g01375 475 MobiDBLite consensus disorder prediction 278 293 - -
Cpe03g01375 475 MobiDBLite consensus disorder prediction 418 475 - -
Cpe03g01375 475 MobiDBLite consensus disorder prediction 1 44 - -
Cpe03g01375 475 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Cpe03g01375 475 PANTHER PROTEIN PHOSPHATASE RELATED 9 454 - -
Cpe03g01375 475 ProSiteProfiles Zinc finger C3H1-type profile. 342 370 IPR000571 GO:0046872
Cpe03g01375 475 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 9 454 - -
Cpe03g01375 475 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Cpe03g01375 475 SMART c3hfinal6 342 369 IPR000571 GO:0046872
Cpe03g01375 475 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Cpe03g01375 475 SMART c3hfinal6 138 165 IPR000571 GO:0046872
Cpe03g01375 475 SMART c3hfinal6 46 73 IPR000571 GO:0046872
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01375 Cpe08g00200 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01375 Cpe-Chr3:11100001 Cpe05g01531 Cpe-Chr5:10541426 7.76E-76 dispersed
Cpe18g00257 Cpe-Chr18:4223686 Cpe03g01375 Cpe-Chr3:11100001 7.71E-17 transposed
Cpe03g01375 Cpe-Chr3:11100001 Cpe08g00200 Cpe-Chr8:1347667 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49256 PF00642 zf-CCCH 1.30E-07 CL0537 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01375 - - csv:101221033 825.854