Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01389 ATGTCTTTGAGGAGTATAATCCAGGAAATGAGATCCAGGTCCCGCCGTGTTGTTCAGGATGGTTCGACGGCTGAAGTCGGCGATGGTTTGGCGCAGAGCTGTTGGACTTACATGCCTCAGGAGTTGTTGAGAGAGATTTTGGTTAGAATCGAGAGCTCTGAGAATGTTTGGCCTCTGCGGAAGAGCGTAGTGGCTTGCGCCGGAGTTTGCCGGAGCTGGAGACGGATTACTAAGGAGATTGTTAAAACTCCTGAGGTTTCTGGCAGATTGACGTTTCCTATTTCTGTGAAGCAGCCTGGTCCCAGGGATTTGCTTCTTCATTGCTTCATAAAACGAAATCGATCTGCACAAACTTATTTCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTCTGCATGTTGATGACATGTCCAAGGCAAGTGGCACCTTCGTTGGAAAATTAAGATCTAATTTTTTAGGAACAAAGTTCACAATCTTTGATGGACAGCCACCTCATGCAGGAGCCAAGCTTTCAAAAAGCCGCTCCTCTAGGCTTGTGGGCCTGAAACAAGTGTCACCTAGAGTTCCTGCCGGCAACTACCCAGTGGCTCACATCTCATATGAGTTGAATGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCATTGTGTAATGGATGCTATTCCTGCCTCAGCTATTGAGCCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCGCTAAGTCGTATCGACTTTCTTCCATCATTGAGATTTTCCTGGTCAAAATCGAATCATTTGGATGATCAACCATCAGGATCTTCAACTGATCAGGAGGATCGAGTCTTAGTGCTTAGGAACAAGGCTGCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCTTCGGTGAAAAACTTTCAGTTAGTCGCTTCACCTGAAAACGGACTTGCTGGACCTGAACACGAAAAGATTATCCTTCAATTTGGAAAAGTAGGAAAGGATATATTTACAATGGACTACAGATACCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGCAGTTTTGACACAAAGATCGCGTGTGAATGA 1164 46.05 MSLRSIIQEMRSRSRRVVQDGSTAEVGDGLAQSCWTYMPQELLREILVRIESSENVWPLRKSVVACAGVCRSWRRITKEIVKTPEVSGRLTFPISVKQPGPRDLLLHCFIKRNRSAQTYFLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHVDDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKLSKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGGVAPIQTEFSLSRIDFLPSLRFSWSKSNHLDDQPSGSSTDQEDRVLVLRNKAARWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGLAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11176850 11180875 - Cp4.1LG03g11220.1 Cpe03g01389 467106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01389 387 Pfam F-box domain 38 82 IPR001810 GO:0005515
Cpe03g01389 387 SUPERFAMILY F-box domain 29 78 IPR036047 GO:0005515
Cpe03g01389 387 PANTHER TUBBY-RELATED 1 387 - -
Cpe03g01389 387 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 387 - -
Cpe03g01389 387 ProSitePatterns Tub family signature 2. 372 387 IPR018066 -
Cpe03g01389 387 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cpe03g01389 387 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Cpe03g01389 387 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Cpe03g01389 387 PRINTS Tubby superfamily signature 299 316 IPR000007 -
Cpe03g01389 387 PRINTS Tubby superfamily signature 317 333 IPR000007 -
Cpe03g01389 387 PRINTS Tubby superfamily signature 344 363 IPR000007 -
Cpe03g01389 387 PRINTS Tubby superfamily signature 365 387 IPR000007 -
Cpe03g01389 387 Pfam Tub family 96 382 IPR000007 -
Cpe03g01389 387 SUPERFAMILY Tubby C-terminal domain-like 84 387 IPR025659 -
Cpe03g01389 387 ProSitePatterns Tub family signature 1. 317 330 IPR018066 -
Cpe03g01389 387 Gene3D Tubby Protein; Chain A 92 387 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01389 K19600 TUB, TULP; tubby and related proteins - csv:101217713 741.495
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01389 Cpe12g00258 CCT
Cpe03g01389 Cpe17g00002 CCT
Cpe03g01389 Cpe17g00002 ECH
Cpe03g01389 Cpe12g00258 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01389 Cpe-Chr3:11176850 Cpe14g00525 Cpe-Chr14:3322335 1.19E-151 dispersed
Cpe17g00641 Cpe-Chr17:5218633 Cpe03g01389 Cpe-Chr3:11176850 2.85E-14 transposed
Cpe12g00258 Cpe-Chr12:1722248 Cpe03g01389 Cpe-Chr3:11176850 0 wgd
Cpe17g00002 Cpe-Chr17:23583 Cpe03g01389 Cpe-Chr3:11176850 0 wgd
Cpe03g01389 Cpe-Chr3:11176850 Cpe08g00216 Cpe-Chr8:1432750 1.10E-160 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g364 . . . Bda08g00279 . . . . Cmo08g01177 Cmo17g00296 Cma06g01463 Cma14g01645 Car06g01262 Car14g01476 Sed02g1224 . Cpe03g01389 Bhi01g00948 Tan10g0947 Cmetu07g1074 Lac12g2379 Hepe05g1485 . Lcy11g1455 Cla06g00505 Cam06g0544 Cec06g0545 Cco06g0552 Clacu06g0531 Cmu06g0529 Cre06g1299 Cone14ag0786 . Cone7ag0180 Cone4ag0175 Lsi05g01499 . Chy11g01469 Cme06g00687 . . . . . . . . . . Cmo14g01689 Cma08g01203 Cma17g00306 Car08g01080 . Cpe12g00258 Cpe17g00002 Bhi12g01742 . . . . . . Cla05g00612 Cam05g0673 Cec05g0683 Cco05g0677 Clacu05g0667 Cmu05g0635 Cre05g0707 Lsi09g01396 Csa03g01411 Chy06g00654 Cme11g01977
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe02g00859 . 1 438 TUB Transcription Factor Family AT1G76900 70.4 7.2e-174 607.4
Cpe14g00302 . 1 428 TUB Transcription Factor Family AT1G76900 69.4 5.9e-168 587.8
Cpe01g02118 CCT 1 444 TUB Transcription Factor Family AT1G76900 66.4 8.8e-164 573.9
Cpe01g00454 . 1 394 TUB Transcription Factor Family AT1G76900 68.4 9.4e-150 527.3
Cpe13g00683 CCT 1 370 TUB Transcription Factor Family AT1G76900 60.8 4.0e-140 495.4
Cpe14g00525 . 1 414 TUB Transcription Factor Family AT1G76900 51.5 1.0e-116 417.5
Cpe01g00695 . 1 413 TUB Transcription Factor Family AT1G76900 50.2 9.2e-113 404.4
Cpe08g00216 . 13 231 TUB Transcription Factor Family AT1G76900 53.6 3.9e-63 239.6
Cpe14g00302 . 174 428 TUB Transcription Factor Family AT1G25280 73.4 1.6e-101 366.3
Cpe02g00859 . 185 438 TUB Transcription Factor Family AT1G25280 68.9 1.5e-94 343.2
Cpe01g02118 CCT 175 444 TUB Transcription Factor Family AT1G25280 66.3 1.8e-87 319.7
Cpe01g00454 . 174 394 TUB Transcription Factor Family AT1G25280 68.4 2.5e-78 289.3
Cpe14g00525 . 178 414 TUB Transcription Factor Family AT1G25280 55.3 4.3e-70 261.9
Cpe03g01389 CCT,ECH 154 387 TUB Transcription Factor Family AT1G25280 53.2 2.8e-69 259.2
Cpe01g00695 . 177 413 TUB Transcription Factor Family AT1G25280 56.2 3.7e-69 258.8
Cpe17g00002 CCT,CST,ECH 154 386 TUB Transcription Factor Family AT1G25280 53.2 5.3e-68 255.0
Cpe02g00120 CCT,ECH 192 420 TUB Transcription Factor Family AT1G25280 54.5 4.5e-67 251.9
Cpe06g00104 CCT,ECH 180 407 TUB Transcription Factor Family AT1G25280 53.0 3.8e-66 248.8
Cpe13g00683 CCT 175 370 TUB Transcription Factor Family AT1G25280 55.7 3.7e-61 232.3
Cpe19g00814 . 183 421 TUB Transcription Factor Family AT1G25280 50.9 6.3e-61 231.5
Cpe17g00002 CCT,CST,ECH 98 386 TUB Transcription Factor Family AT5G18680 62.5 9.0e-101 364.0
Cpe03g01389 CCT,ECH 98 387 TUB Transcription Factor Family AT5G18680 62.6 1.1e-95 347.1
Cpe12g00258 CCT,CST,ECH 94 392 TUB Transcription Factor Family AT5G18680 57.3 3.2e-90 328.9
Cpe14g00302 . 113 428 TUB Transcription Factor Family AT5G18680 53.1 8.5e-83 304.3
Cpe02g00859 . 112 438 TUB Transcription Factor Family AT5G18680 50.8 1.2e-81 300.4
Cpe01g02118 CCT 112 444 TUB Transcription Factor Family AT5G18680 50.6 2.3e-80 296.2
Cpe01g00695 . 115 413 TUB Transcription Factor Family AT5G18680 53.3 1.4e-77 287.0
Cpe14g00525 . 116 414 TUB Transcription Factor Family AT5G18680 51.5 4.1e-77 285.4
Cpe02g00120 CCT,ECH 128 420 TUB Transcription Factor Family AT5G18680 50.8 9.1e-77 284.3
Cpe08g00216 . 98 231 TUB Transcription Factor Family AT5G18680 63.2 1.1e-42 171.0
Cpe14g00525 . 1 414 TUB Transcription Factor Family AT2G18280 60.9 9.0e-141 497.3
Cpe01g00695 . 1 413 TUB Transcription Factor Family AT2G18280 60.8 1.5e-140 496.5
Cpe19g00814 . 1 421 TUB Transcription Factor Family AT2G18280 58.9 6.9e-133 471.1
Cpe06g00104 CCT,ECH 1 407 TUB Transcription Factor Family AT2G18280 59.3 3.4e-124 442.2
Cpe02g00120 CCT,ECH 14 420 TUB Transcription Factor Family AT2G18280 58.8 1.9e-122 436.4
Cpe14g00302 . 1 428 TUB Transcription Factor Family AT2G18280 52.5 6.3e-118 421.4
Cpe02g00859 . 1 438 TUB Transcription Factor Family AT2G18280 50.7 3.8e-115 412.1
Cpe17g00002 CCT,CST,ECH 1 386 TUB Transcription Factor Family AT2G18280 53.6 5.0e-115 411.8
Cpe03g01389 CCT,ECH 1 387 TUB Transcription Factor Family AT2G18280 52.8 6.1e-113 404.8
Cpe01g02118 CCT 1 444 TUB Transcription Factor Family AT2G18280 51.5 1.8e-112 403.3
Cpe12g00258 CCT,CST,ECH 12 392 TUB Transcription Factor Family AT2G18280 50.9 2.8e-102 369.4
Cpe01g00519 CST 51 383 TUB Transcription Factor Family AT2G18280 51.1 1.1e-93 340.9
Cpe14g00370 CST 53 395 TUB Transcription Factor Family AT2G18280 50.6 7.0e-93 338.2
Cpe17g00002 CCT,CST,ECH 1 386 TUB Transcription Factor Family AT2G47900 68.5 2.6e-159 558.9
Cpe03g01389 CCT,ECH 1 387 TUB Transcription Factor Family AT2G47900 67.0 3.5e-156 548.5
Cpe12g00258 CCT,CST,ECH 11 392 TUB Transcription Factor Family AT2G47900 63.5 1.2e-135 480.3
Cpe02g00859 . 1 438 TUB Transcription Factor Family AT2G47900 55.7 1.2e-132 470.3
Cpe14g00302 . 1 428 TUB Transcription Factor Family AT2G47900 55.7 3.7e-129 458.8
Cpe01g02118 CCT 1 444 TUB Transcription Factor Family AT2G47900 53.7 5.5e-125 444.9
Cpe14g00525 . 1 414 TUB Transcription Factor Family AT2G47900 56.2 1.0e-123 440.7
Cpe01g00695 . 1 413 TUB Transcription Factor Family AT2G47900 55.8 1.1e-120 430.6
Cpe02g00120 CCT,ECH 20 420 TUB Transcription Factor Family AT2G47900 57.0 7.7e-119 424.5
Cpe06g00104 CCT,ECH 50 407 TUB Transcription Factor Family AT2G47900 60.1 9.4e-117 417.5
Cpe01g00454 . 1 394 TUB Transcription Factor Family AT2G47900 53.2 2.6e-111 399.4
Cpe19g00814 . 1 421 TUB Transcription Factor Family AT2G47900 51.2 7.7e-111 397.9
Cpe01g00519 CST 51 383 TUB Transcription Factor Family AT2G47900 52.9 5.9e-103 371.7
Cpe14g00370 CST 53 395 TUB Transcription Factor Family AT2G47900 50.4 3.0e-99 359.4
Cpe08g00216 . 1 231 TUB Transcription Factor Family AT2G47900 63.5 4.3e-85 312.4
Cpe17g00641 . 70 295 TUB Transcription Factor Family AT1G16070 61.7 2.6e-76 282.7
Cpe14g00302 . 66 428 TUB Transcription Factor Family AT1G43640 67.7 8.6e-146 513.8
Cpe02g00859 . 67 438 TUB Transcription Factor Family AT1G43640 67.4 2.3e-143 505.8
Cpe01g02118 CCT 65 444 TUB Transcription Factor Family AT1G43640 62.2 1.2e-134 476.9
Cpe01g00454 . 66 394 TUB Transcription Factor Family AT1G43640 65.7 2.9e-125 445.7
Cpe13g00683 CCT 65 370 TUB Transcription Factor Family AT1G43640 56.1 3.4e-110 395.6
Cpe17g00002 CCT,CST,ECH 47 386 TUB Transcription Factor Family AT1G43640 51.8 7.9e-107 384.4
Cpe03g01389 CCT,ECH 49 387 TUB Transcription Factor Family AT1G43640 53.4 1.1e-105 380.6
Cpe12g00258 CCT,CST,ECH 49 392 TUB Transcription Factor Family AT1G43640 50.3 2.1e-99 359.8
Cpe06g00104 CCT,ECH 69 407 TUB Transcription Factor Family AT1G43640 51.0 1.0e-98 357.5
Cpe02g00120 CCT,ECH 81 420 TUB Transcription Factor Family AT1G43640 50.7 3.0e-98 355.9
Cpe14g00525 . 69 414 TUB Transcription Factor Family AT1G43640 51.1 8.7e-98 354.4
Cpe08g00216 . 49 231 TUB Transcription Factor Family AT1G43640 55.7 8.2e-56 214.9
Cpe02g00120 CCT,ECH 47 420 TUB Transcription Factor Family AT1G47270 63.7 1.8e-133 473.0
Cpe06g00104 CCT,ECH 34 407 TUB Transcription Factor Family AT1G47270 63.7 4.0e-133 471.9
Cpe14g00525 . 34 414 TUB Transcription Factor Family AT1G47270 57.5 1.2e-121 433.7
Cpe01g00695 . 34 413 TUB Transcription Factor Family AT1G47270 57.8 2.7e-121 432.6
Cpe19g00814 . 33 421 TUB Transcription Factor Family AT1G47270 57.3 3.0e-120 429.1
Cpe14g00302 . 1 428 TUB Transcription Factor Family AT1G47270 51.3 7.8e-113 404.4
Cpe02g00859 . 31 438 TUB Transcription Factor Family AT1G47270 51.3 2.5e-111 399.4
Cpe17g00002 CCT,CST,ECH 1 386 TUB Transcription Factor Family AT1G47270 50.7 2.1e-110 396.4
Cpe01g02118 CCT 48 444 TUB Transcription Factor Family AT1G47270 51.0 9.9e-108 387.5
Cpe03g01389 CCT,ECH 1 387 TUB Transcription Factor Family AT1G47270 51.7 2.1e-105 379.8
Cpe14g00370 CST 1 395 TUB Transcription Factor Family AT1G53320 69.7 2.0e-153 539.3
Cpe01g00519 CST 1 383 TUB Transcription Factor Family AT1G53320 70.3 6.4e-152 534.3
Cpe01g00695 . 20 413 TUB Transcription Factor Family AT1G53320 50.5 2.1e-102 369.8
Cpe17g00002 CCT,CST,ECH 24 386 TUB Transcription Factor Family AT1G53320 50.1 1.8e-101 366.7
Cpe14g00525 . 20 414 TUB Transcription Factor Family AT1G53320 50.1 2.3e-101 366.3
Cpe03g01389 CCT,ECH 33 387 TUB Transcription Factor Family AT1G53320 50.8 7.0e-98 354.8
Cpe08g00216 . 33 231 TUB Transcription Factor Family AT1G53320 52.3 7.8e-57 218.4
Cpe03g01389 CCT,ECH 98 387 TUB Transcription Factor Family AT3G06380 63.4 1.1e-95 347.1
Cpe17g00002 CCT,CST,ECH 98 386 TUB Transcription Factor Family AT3G06380 62.5 1.9e-95 346.3
Cpe12g00258 CCT,CST,ECH 98 392 TUB Transcription Factor Family AT3G06380 56.2 5.1e-85 311.6
Cpe14g00302 . 117 428 TUB Transcription Factor Family AT3G06380 54.1 2.4e-82 302.8
Cpe02g00859 . 116 438 TUB Transcription Factor Family AT3G06380 50.8 3.8e-80 295.4
Cpe02g00120 CCT,ECH 131 420 TUB Transcription Factor Family AT3G06380 50.8 5.5e-79 291.6
Cpe14g00525 . 120 414 TUB Transcription Factor Family AT3G06380 51.5 3.0e-77 285.8
Cpe01g00695 . 119 413 TUB Transcription Factor Family AT3G06380 53.2 3.9e-77 285.4
Cpe01g02118 CCT 116 444 TUB Transcription Factor Family AT3G06380 50.2 3.9e-77 285.4
Cpe06g00104 CCT,ECH 120 407 TUB Transcription Factor Family AT3G06380 50.7 1.5e-76 283.5
Cpe01g00454 . 117 394 TUB Transcription Factor Family AT3G06380 50.4 2.9e-64 242.7
Cpe08g00216 . 98 231 TUB Transcription Factor Family AT3G06380 65.7 5.2e-45 178.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002294 1 2 1 1 2 2 3 2 2 2 2 2 4 1 2 4 2 3 3 2 2 2 2 2 2 2 2 3 2 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49258 PF01167 Tub 4.90E-109 CL0395 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01389 Cpe_Chr03 FPKM 1.775114 1.377365 12.921908 12.535963 18.629749 14.170835 19.884735 6.471737 7.497226 7.027627