Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01389 ATGTCTTTGAGGAGTATAATCCAGGAAATGAGATCCAGGTCCCGCCGTGTTGTTCAGGATGGTTCGACGGCTGAAGTCGGCGATGGTTTGGCGCAGAGCTGTTGGACTTACATGCCTCAGGAGTTGTTGAGAGAGATTTTGGTTAGAATCGAGAGCTCTGAGAATGTTTGGCCTCTGCGGAAGAGCGTAGTGGCTTGCGCCGGAGTTTGCCGGAGCTGGAGACGGATTACTAAGGAGATTGTTAAAACTCCTGAGGTTTCTGGCAGATTGACGTTTCCTATTTCTGTGAAGCAGCCTGGTCCCAGGGATTTGCTTCTTCATTGCTTCATAAAACGAAATCGATCTGCACAAACTTATTTCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTCTGCATGTTGATGACATGTCCAAGGCAAGTGGCACCTTCGTTGGAAAATTAAGATCTAATTTTTTAGGAACAAAGTTCACAATCTTTGATGGACAGCCACCTCATGCAGGAGCCAAGCTTTCAAAAAGCCGCTCCTCTAGGCTTGTGGGCCTGAAACAAGTGTCACCTAGAGTTCCTGCCGGCAACTACCCAGTGGCTCACATCTCATATGAGTTGAATGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCATTGTGTAATGGATGCTATTCCTGCCTCAGCTATTGAGCCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCGCTAAGTCGTATCGACTTTCTTCCATCATTGAGATTTTCCTGGTCAAAATCGAATCATTTGGATGATCAACCATCAGGATCTTCAACTGATCAGGAGGATCGAGTCTTAGTGCTTAGGAACAAGGCTGCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCTTCGGTGAAAAACTTTCAGTTAGTCGCTTCACCTGAAAACGGACTTGCTGGACCTGAACACGAAAAGATTATCCTTCAATTTGGAAAAGTAGGAAAGGATATATTTACAATGGACTACAGATACCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGCAGTTTTGACACAAAGATCGCGTGTGAATGA 1164 46.05 MSLRSIIQEMRSRSRRVVQDGSTAEVGDGLAQSCWTYMPQELLREILVRIESSENVWPLRKSVVACAGVCRSWRRITKEIVKTPEVSGRLTFPISVKQPGPRDLLLHCFIKRNRSAQTYFLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHVDDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKLSKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGGVAPIQTEFSLSRIDFLPSLRFSWSKSNHLDDQPSGSSTDQEDRVLVLRNKAARWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGLAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11176850 11180875 - Cp4.1LG03g11220.1 Cpe03g01389 467106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01389 387 Pfam F-box domain 38 82 IPR001810 GO:0005515
Cpe03g01389 387 SUPERFAMILY F-box domain 29 78 IPR036047 GO:0005515
Cpe03g01389 387 PANTHER TUBBY-RELATED 1 387 - -
Cpe03g01389 387 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 387 - -
Cpe03g01389 387 ProSitePatterns Tub family signature 2. 372 387 IPR018066 -
Cpe03g01389 387 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cpe03g01389 387 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Cpe03g01389 387 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Cpe03g01389 387 PRINTS Tubby superfamily signature 299 316 IPR000007 -
Cpe03g01389 387 PRINTS Tubby superfamily signature 317 333 IPR000007 -
Cpe03g01389 387 PRINTS Tubby superfamily signature 344 363 IPR000007 -
Cpe03g01389 387 PRINTS Tubby superfamily signature 365 387 IPR000007 -
Cpe03g01389 387 Pfam Tub family 96 382 IPR000007 -
Cpe03g01389 387 SUPERFAMILY Tubby C-terminal domain-like 84 387 IPR025659 -
Cpe03g01389 387 ProSitePatterns Tub family signature 1. 317 330 IPR018066 -
Cpe03g01389 387 Gene3D Tubby Protein; Chain A 92 387 IPR025659 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01389 Cpe12g00258 CCT
Cpe03g01389 Cpe17g00002 CCT
Cpe03g01389 Cpe17g00002 ECH
Cpe03g01389 Cpe12g00258 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01389 Cpe-Chr3:11176850 Cpe14g00525 Cpe-Chr14:3322335 1.19E-151 dispersed
Cpe17g00641 Cpe-Chr17:5218633 Cpe03g01389 Cpe-Chr3:11176850 2.85E-14 transposed
Cpe12g00258 Cpe-Chr12:1722248 Cpe03g01389 Cpe-Chr3:11176850 0 wgd
Cpe17g00002 Cpe-Chr17:23583 Cpe03g01389 Cpe-Chr3:11176850 0 wgd
Cpe03g01389 Cpe-Chr3:11176850 Cpe08g00216 Cpe-Chr8:1432750 1.10E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49258 PF01167 Tub 4.90E-109 CL0395 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01389 K19600 - csv:101217713 741.495