Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01393 ATGCAGGTTGCTATCTTAGACAAGATGGCATCTTCACAAAATGTTGAGCTGGAAGCAGCGAAGTTTCTGCACAAACTCATTCAAGAATCTAGAGACGAGCCAGCAAAATTGGCTACAAAACTCTACGTGATATTACAACACATGAAATCAAGTGGGAAAGAACATTCCATGCCATATCAAGTAATTTCGAGGGCCATGGAGACTGTCATCAATCAACATGGTCTTGATATTGAAGCTTTGAGGGCATCACGCCTTCCTCTAACTGGTGGAACTCAGATGGGTGATTCTTCAACTGCACAATATGCGGGTTCTTCCAGTGTTGCTGGTGCTGCTAAAGATTCCAAAATGGATATATCTGGAAGTGAGATGACCAAAAGTGGCCCACTTGCTTCAAGCAAGCCACCTGTTGGCCCAAGTAGTACAGATCACGATTATTATCCTGGATCCACAACCCATCGAAGTGGTCAATCTTTTGATCAAGAAAGTCCGTCTAGTTTGGATTCAAGGTCTGCCAACTCACAGTCACAAGAGAAGCATGATTCAGTGAATTGGGACAAGCAATTAAATGACAAGGATGGTAAGAAGGGCAGCAAGAAAAGGAAGAAGGTGGATACATCAGTTCTGGAACCATCTAGTGACAATACTCATCAACTTGATACACGCAGTTCACTGGTTAATCCTAGGAATGTAAAGACGAATAGGGTTGAATCACCGGCATATTTAGTTAAAGGAGGCAATATTGATCAGACAAAATATGGACTAACGAAAGCTGCTGAAAAGCTTATTGACCCTCAAAGTTATTCTGTAAGCCGAGGCGATGGGATATCTACCTCCAGTGAAAAAGTTATGGAGTGTGAACTACCTATGTCTAGCACATCATCAGTTGATGCTACAAAGATGATCCAGGTTCCTACCTCTTCCCAATCTCGTTTGCCTTTCAAGGAACAACAATTAAAGCAACTTAGGGCTCAGTGCCTTGTGTTTTTGGCATTCAGAAATGGTTTAATGCCAAAGAAACTGCATCTTGAAATTGCCCTTGGGAATAATTTTCCGAAAGAAGAGGGGCTTCGCAAAGATGTCGATCCTAGAGGCATTGCTCAATCATTTAATGAGGCCAGAAGTACCACTGAAGTCATGATGGCATCAGGAAAATTGGATGCTGCAAGGGAAACAGGAATTGTGGCCCCAGGCGCCATATCTGCAGGAAGAATCTACGAGGCCGACTCCATGAAAGAAGTAGATAATAGGGGAGTGGAGGATAAAAAGGGTGCACCATCTGATTATTTTGTTCAAGCAGAAGCAAGAAAACCAGAGGCTGAAGTAATGCGGGAAAAAGCAATTTCCCAAACATGCTTGAGCTCTGCATCACATCCTTCTGACTTTTCAGGTGCAAGGGGGGTTTTAACTGTGAATAATCCTGTTGAGGATTTGGAGAATAGCAATCTTCAAGCCACTGCTGCCGTGGGGATGAGTAAGCCACTAAACCCTGAAACAGTTAGCTGGACAGGAATTGGCAGCACAAATGAGCTTTCTAGGGGAAGTCTACCAGCCTTTGCTGGTCAGCATGAGCTGGTAGTTGATAGGAAGAATGACGTCTCTGCTCAGTTGCACACTGTTCGGAACAATAGTGGTTTGGGGAGTCAATATATTGATAGTCAGTCTTCATTTTCGATGGGAGAGCGGTGGAAACCTATCTCTGGGGCATATGATCAATACCATGCTGCAATGCCCTCTAGAGATGCTAGTATGATCTCAAATCTTGCATCTCATGATGATATGAATGTGCCCGAATCCGAATCTAGATGCAACACAGAAGTGCAAAAAGTGGTATCTATTGATGGAGGGAAAAATAGCAGCCTAAATTCTATGGAACAAGAAGATGATGGTAAGTTAGTGCCATCTGATTTGCCGAAGTCTCCAAAGTACACCATGTCAGAGAAATGGATAATGGATCGGCAGAGAAAGAAACTCCTAAATGAGCAAAATTGGTTACTGAAACAACAAAAAACTGAGAGACGTATTGGCACTTGTTTTGATAAGTTAAAGAATACTGTCAGCTCGTCGGAAGATATATCTGCAAAAACTAGAAGTGTAATAGAATTGAAAAAGCTTCAACTCTTGCAGCTTCAGCGCCGCCTCAGGAATGATTTTCTTAATGATTTCTTCAAACCAATTTCAAATGAGATGGACCGCTTGAAATCTTTCAAGAAGTATAAACATGGTAGGAGGATTAAACAACTTGAGAAATATGAACAGAGAATGAAGGAGGAGAGACAAAAGAGAATTCGGGAGAGGCAAAAGGAATTCTTTGGTGAGATAGAAGTTCACAAGGAAAGACTTGATGACACGTTTAAAGTTAAGAGAGAGAGGTGGAAGGGTTTCAATAAGTATGCGAAGGAGTTCCACAAAAGGAAGGAACGAATTCATCGTGAGAAGATTGACAGAATCCAGCGTGAGAAGATCAATCTCTTGAAGATCAACGATGTAGAGGGGTATCTTCGAATGGTGCAGGATGCAAAATCAGATCGTGTTAAGCAACTTCTCAAGGAGACTGAGAAATATCTTCAGAAGCTTGGATCCAAGCTACAGGTGGCAAAATCCATGGCAACCCGATTTGAGGACGATATGGATGATGGAGGAGATGTGAATGTTGCTGAAAAAAGTGAAGTTGCGATTGAAAATGAAGATGAAAGTGATCAGGCTAAGGCAAGTGGTTCTCTTCTCACTTTCTTACATCAGTTTTTGTTTCATTCACTAATTATATTGACTTTCTTCTTACAGCATTATTTGGAAAGTAACGAGAAGTACTACCTGATGGCTCATAGTGTAAAGGAAAGCATAGCTGAGCAGCCGTCTTGTCTTCAGGGAGGAAAGTTGAGGGAGTATCAGATGAATGGCCTTCGGTGGCTCGTTTCATTATATAACAACCATTTGAATGGAATACTTGCTGATGAAATGGGGCTTGGAAAAACTGTTCAGACTAAGAATGACCGAGGTCCCTTTTTGGTGGTTGTGCCATCATCAGTTTTACCCGGATGGGAGTCGGAGATCAACTTCTGGGCCCCCAGTATCCTTAAAATTGTGTATTCTGGGCCTCCAGAAGAGCGGCGTAGATTATTCAAGGAGAGAATTGTTCATCAGAAATTTAATGTCCTTCTGACCACATACGAGTATCTGATGAACAAGCATGATAGGCCAAAACTGAGCAAAATTCATTGGCACTATATCATAATTGATGAAGGCCATCGCATAAAGAATGCTTCGTGCAAGTTGAATGCTGATCTGAAGCACTACAAGAGTTCTCACAGATTACTCTTGACTGGAACACCGCTACAGCAAACATCGGCAAATAAATTAGAGCTTGCTTCAGAAGAGTTGCCACATTTTCCTTCGTCTGATGATGGAATTGTTCAAGTCCATGAAGTTTCTGCTGGAAAACCCGATGATTCAGATATAGCTAAATCTGATAGAGGTTCTTCTCCGGAGTTTGATCCGAAAACTGATGTTGAAGATCAGAAAGCACCAGAATTAAATGATAGTAGTAATTGTATTCCGGAGGGGAATTTGAATGTACCAGATAATGTGGAAAACAAAGTGGAAGACAATGTTCAATCTGTTAATCCTGAGGATGTTCCTGAGCCAATTCCTCCGATCCAGGATAGTGAAGCTAACAAAACCGACAACCATGGTACGTTCCTCATGGATATGGACATCTCGAGAAATGACGATCTAGATGAATCAGATGGTGGTGGACTAATCCCTGCTGGTATTTCACCTTCAACAGCAGAGAGAGAAAATGAATCCAAAAGTTCTGATGCTATTGTTCAAATGGACGTTTCTGACGGAGAACGTGTAGTAGAACATACAACCGATAATATTGTCATGCCATCACCTTCAGTGCAGGGAGAGGAAGAAAATTGTTCTTTAACGTCTGTGGTAAATCAAGTTGATGGTTTAGGGAACCTAGAGGAAACGAAAAATATCGGAGTTGATGCTAATCTTCAAGTGATTACGTCTCAGGATGATGTTATGATTTCAGCAAACCCTGTGCAAGAAAGTATTGCGCTACAGGAAGGAAGGATTGAGGGATCTGGTGAGATAAATCAAGGGTCACCTATCGAGAAAAGGCAATCTGATCATCAAGTTGAGGACGTTCTTGTTGATCATATGGAAGAAGATAAATCTGGAAATTTGGCCGAACCTTTATCTTCCTCACAAGTTGAGGAAACACATTTGATGTTGCCCAATACAACTTTAGATAATTCAGGTGACCAAATTAATGTGCCTGTATCCTCATCCACAGTGACAGACACAGAAAATATTGGTTGTTCTTCAAAGGATGATCTGTATGACTGCACGGTTGCAGATTCAGTAAAAGCTCTCGACGATAGTGAACAATTACAAAACAAGCTATCAGAAGTTTCGGTTGTGCTTGCTTCATCTGACAGGAATGAGGACTCAACTCCAAGGGATCCCATCAGCTCTCCAATCTCTCTGGAGGGGCCACCAAGTGATTATCAAATAAGTAGTGACCATGTGGTTGCAACACAGGATAACATTGTTTTGTCAGAAAACATGTCATCTGTTGCGTTAGCTGAGGAAGACAAGCAGCAAACTTCCTCCGAGAAAACGTTTTCTGATAGTGCAGAGCCGTTGGAGGATTGCGAGGATTCTGGTAATAGAAATGACAAATTGGACGGAGCTCATGTCAACAAGGAACAGCTTCTAAGCATCACTGAAAACCTTGTCTCCATTGATCTTTCCGATCATCTTATAGTATCAAAGAAGGAAGCTTTAGCTGGTGATCAGATTAATGTTCCTCAAACTGGGGAGTCTGTACCCGTAAACGCAGTTGATACGTTAAACCAGCCCCCACCTCCAACAACCATGGAAGAAGAAAAAATTGAAGCCTCATTTGACAGTGGTCGAATTGCTAGCCCACCGCCACTGAAAGACGTAAAAGGTTTCCAGGCTGAAACAGATTCAATGAATTCTTCTCAACCTGATAGGATTTCAGAAGAAAATATGTCAGGAGAAACAATTTTGCCTTCATCTCCTCCTGTGTTGGAGGTAGGAGAAGCTATAGTGCAATCTGGCGTGCAAGTTCAGATTGACCGAACGGATGCGACTGAGGTGGGGGAGCCTTCTCTAAAGAGGGCTGTAACGGAAGTAGCCAGTCCTCCATCCTCTCTACCCGAAGAAGATAAAAGCTTGGAACGCACGTCAGTTTCGAGTCTGGCTGATAGTGCCATTGCAGTTGCAGAAACAGTTGTATGCAATGAAGCTGATGAATCCACAGAAAATGGAAGGTGCCTACCGGCTGCTGCCTCATCTGTGCAATATCCGGCTGATAGCGTTGCAGATGCAGTAAAGGGTTCAGAAGATACTGCTGCCATATGTGATCAAGTTGATGCTCCTCGAGTTTGTGAGGCGGTAAAGGGTTCAGAAGATACTGCTGCCATATGCGATCAAGTTGATGTTCCTCGAGTTTGTGACGCAGTAAAGAGTTCAGCTGATACTGCTTCCATATGTGATCAAGTTGATTCATCTCCTCCAGCTTCCGAGTTAGCAAAGGATCCAGCTGATAGCGCCACAGCATGTGATCAAGTTGATGTTCCTCCAACATTCAACACGGTGCAGGCTCCAACTGATAGCACCATTGCAGTTGCAGAAACTGCCATATGTGATCAAGTTGATGTTCCTCCAACATTCGACACGGTGCAGGCTCCAACTGATAGCACCATTGCAGTTGCAGAAACTGCCATACGTGATCAAGTTGATGTTCCTCCAACATTCAACACGGTGCAGACTCCAACTGATATCACCATTGCAGTTGCAGAAACTGCCATACATGATCCAGTTGATGTTCCTCCAACATTCGACACAGTGCAGACTCCAACTGATAGCACCATTGCAGTTGCAGAAACTGCCATACGTGATCAAGTTGATGTTCCTCCAACATTCGACACGGTGCAGACTCCAACTGATAGCGCCATTGCAGTTGCAGAACCCACCATATGTGATCAAGTTGATGTTCCTCCAGTTCATGACTTGGTACCAGAAAATAAATCTGCAAATTTGGACCTGCCTCCTGGATGTTCGACAGCGGAAGATGAAAGCGGGGAGCGGTCACCAGAAGAGACTCCAGTTATCAAGAATTCAGTTGAATCACCAAAGCAA 6180 42.9 MQVAILDKMASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMETVINQHGLDIEALRASRLPLTGGTQMGDSSTAQYAGSSSVAGAAKDSKMDISGSEMTKSGPLASSKPPVGPSSTDHDYYPGSTTHRSGQSFDQESPSSLDSRSANSQSQEKHDSVNWDKQLNDKDGKKGSKKRKKVDTSVLEPSSDNTHQLDTRSSLVNPRNVKTNRVESPAYLVKGGNIDQTKYGLTKAAEKLIDPQSYSVSRGDGISTSSEKVMECELPMSSTSSVDATKMIQVPTSSQSRLPFKEQQLKQLRAQCLVFLAFRNGLMPKKLHLEIALGNNFPKEEGLRKDVDPRGIAQSFNEARSTTEVMMASGKLDAARETGIVAPGAISAGRIYEADSMKEVDNRGVEDKKGAPSDYFVQAEARKPEAEVMREKAISQTCLSSASHPSDFSGARGVLTVNNPVEDLENSNLQATAAVGMSKPLNPETVSWTGIGSTNELSRGSLPAFAGQHELVVDRKNDVSAQLHTVRNNSGLGSQYIDSQSSFSMGERWKPISGAYDQYHAAMPSRDASMISNLASHDDMNVPESESRCNTEVQKVVSIDGGKNSSLNSMEQEDDGKLVPSDLPKSPKYTMSEKWIMDRQRKKLLNEQNWLLKQQKTERRIGTCFDKLKNTVSSSEDISAKTRSVIELKKLQLLQLQRRLRNDFLNDFFKPISNEMDRLKSFKKYKHGRRIKQLEKYEQRMKEERQKRIRERQKEFFGEIEVHKERLDDTFKVKRERWKGFNKYAKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLQVAKSMATRFEDDMDDGGDVNVAEKSEVAIENEDESDQAKASGSLLTFLHQFLFHSLIILTFFLQHYLESNEKYYLMAHSVKESIAEQPSCLQGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQTKNDRGPFLVVVPSSVLPGWESEINFWAPSILKIVYSGPPEERRRLFKERIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYKSSHRLLLTGTPLQQTSANKLELASEELPHFPSSDDGIVQVHEVSAGKPDDSDIAKSDRGSSPEFDPKTDVEDQKAPELNDSSNCIPEGNLNVPDNVENKVEDNVQSVNPEDVPEPIPPIQDSEANKTDNHGTFLMDMDISRNDDLDESDGGGLIPAGISPSTAERENESKSSDAIVQMDVSDGERVVEHTTDNIVMPSPSVQGEEENCSLTSVVNQVDGLGNLEETKNIGVDANLQVITSQDDVMISANPVQESIALQEGRIEGSGEINQGSPIEKRQSDHQVEDVLVDHMEEDKSGNLAEPLSSSQVEETHLMLPNTTLDNSGDQINVPVSSSTVTDTENIGCSSKDDLYDCTVADSVKALDDSEQLQNKLSEVSVVLASSDRNEDSTPRDPISSPISLEGPPSDYQISSDHVVATQDNIVLSENMSSVALAEEDKQQTSSEKTFSDSAEPLEDCEDSGNRNDKLDGAHVNKEQLLSITENLVSIDLSDHLIVSKKEALAGDQINVPQTGESVPVNAVDTLNQPPPPTTMEEEKIEASFDSGRIASPPPLKDVKGFQAETDSMNSSQPDRISEENMSGETILPSSPPVLEVGEAIVQSGVQVQIDRTDATEVGEPSLKRAVTEVASPPSSLPEEDKSLERTSVSSLADSAIAVAETVVCNEADESTENGRCLPAAASSVQYPADSVADAVKGSEDTAAICDQVDAPRVCEAVKGSEDTAAICDQVDVPRVCDAVKSSADTASICDQVDSSPPASELAKDPADSATACDQVDVPPTFNTVQAPTDSTIAVAETAICDQVDVPPTFDTVQAPTDSTIAVAETAIRDQVDVPPTFNTVQTPTDITIAVAETAIHDPVDVPPTFDTVQTPTDSTIAVAETAIRDQVDVPPTFDTVQTPTDSAIAVAEPTICDQVDVPPVHDLVPENKSANLDLPPGCSTAEDESGERSPEETPVIKNSVESPKQ 2060
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11212318 11238952 + Cp4.1LG03g11190.1 Cpe03g01393 467110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01393 2060 MobiDBLite consensus disorder prediction 208 231 - -
Cpe03g01393 2060 MobiDBLite consensus disorder prediction 1658 1682 - -
Cpe03g01393 2060 MobiDBLite consensus disorder prediction 1205 1225 - -
Cpe03g01393 2060 MobiDBLite consensus disorder prediction 120 178 - -
Cpe03g01393 2060 MobiDBLite consensus disorder prediction 179 207 - -
Cpe03g01393 2060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 934 1137 IPR027417 -
Cpe03g01393 2060 MobiDBLite consensus disorder prediction 1144 1175 - -
Cpe03g01393 2060 MobiDBLite consensus disorder prediction 1479 1503 - -
Cpe03g01393 2060 MobiDBLite consensus disorder prediction 1536 1563 - -
Cpe03g01393 2060 SMART ultradead3 955 1139 IPR014001 -
Cpe03g01393 2060 MobiDBLite consensus disorder prediction 1531 1563 - -
Cpe03g01393 2060 MobiDBLite consensus disorder prediction 91 231 - -
Cpe03g01393 2060 Gene3D - 927 1124 IPR038718 -
Cpe03g01393 2060 MobiDBLite consensus disorder prediction 614 637 - -
Cpe03g01393 2060 PANTHER SNF2/RAD54 HELICASE FAMILY 109 246 - -
Cpe03g01393 2060 PANTHER SNF2/RAD54 HELICASE FAMILY 295 1112 - -
Cpe03g01393 2060 SMART QLQ_2 311 346 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cpe03g01393 2060 PANTHER CHROMATIN STRUCTURE-REMODELING COMPLEX PROTEIN SYD 109 246 - -
Cpe03g01393 2060 PANTHER CHROMATIN STRUCTURE-REMODELING COMPLEX PROTEIN SYD 295 1112 - -
Cpe03g01393 2060 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 971 1128 IPR014001 -
Cpe03g01393 2060 MobiDBLite consensus disorder prediction 91 107 - -
Cpe03g01393 2060 MobiDBLite consensus disorder prediction 1143 1193 - -
Cpe03g01393 2060 Coils Coil 747 767 - -
Cpe03g01393 2060 MobiDBLite consensus disorder prediction 1615 1686 - -
Cpe03g01393 2060 ProSiteProfiles HSA domain profile. 752 826 IPR014012 -
Cpe03g01393 2060 MobiDBLite consensus disorder prediction 1706 1743 - -
Cpe03g01393 2060 MobiDBLite consensus disorder prediction 1243 1271 - -
Cpe03g01393 2060 Pfam SNF2-related domain 963 1115 IPR000330 GO:0005524|GO:0140658
Cpe03g01393 2060 MobiDBLite consensus disorder prediction 2013 2060 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01393 - - - cpep:111790723 2028.06
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01393 Cpe08g00220 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01393 Cpe-Chr3:11212318 Cpe03g01736 Cpe-Chr3:13155230 2.99E-67 dispersed
Cpe17g00093 Cpe-Chr17:551467 Cpe03g01393 Cpe-Chr3:11212318 1.94E-41 wgd
Cpe03g01393 Cpe-Chr3:11212318 Cpe08g00220 Cpe-Chr8:1463405 9.61E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g371 . . . . . Bpe14g01153 . . . . Cma06g01457 Cma14g01649 Car06g01259 Car14g01483 Sed02g1676 Cpe08g00220 Cpe03g01393 Bhi01g00925 Tan10g0941 Cmetu06g0809 . Hepe05g1489 . Lcy11g1461 . . . . . . . Cone14ag0789 Cone15ag0790 . . Lsi05g01493 . . Cme06g00682 Blo02g00553 . . . . . Bma02g00714 . . Cmo06g01459 Cmo14g01693 . . . . . . . . . . . . . Cla05g00609 Cam05g0669 Cec05g0679 Cco05g0673 Clacu05g0664 Cmu05g0632 Cre05g0702 . Csa03g01407 Chy06g00650 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006639 1 1 1 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 0 2 1 0 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49259 PF00176 SNF2_N 3.30E-34 CL0023 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01393 Cpe_Chr03 FPKM 24.465654 24.810549 38.201542 38.876495 9.752528 12.940778 10.423197 76.239517 77.140923 75.483696