Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01397 ATTTGTTTCGGTTACAGTCCGGAAACCGCCATCCACTCAACTCTGCCTTTCTTCACTGCAACAATCTGCGCGCCGTTTTCATTTCACTTCGTCGTCTTCATCCTTTTGATCGTTGTTTTGCTTCTTAACCGAAGTTGCAAACTTCGTAAGTTTCAGGAGCGACAATTGATTTTCAGGGGAGTGGTGAACGCAGAGGAAATGTTGCTGCAGAGGAATTTTTTGGTTGTTTTAGTGTTGATTGGAGTGGTTTTTGGAGCCAATTTGAGCGTTGTAAAGGCATTGCCACGACGAATTCTCTTGGACACAGATGTGAATACTGATGATTTATTTGCTCTTTTGTACCTCTTGAAGCTTAATCGATCGGAGTTTGAGTTGGAGGCAATCACTATTAGCGCAAATGCTTGGACAAGTGCTGGACATGCAGTGAACCAAATCTATGATATTCTATACATGATGGGCCGCGATGATATTGCGGTTGGAGTTGGAGGAGAAGGTGGAATACTCGATGATGGAACAATTCAACCCAACGTTGGTGGATATATTTCCATAATTGACCAGGGATTGACGACTACAGGCGGATGTAGATATAGACAAGCCATTCCCCTTGGTATTAGAGGGCGATTAGATGCTGATACCAACTATGGACTTCGCAAAGCCTTCCTCCCACAGGGAAGCAGGAAATATAATCCTTTGCAACAAAAGACTGCTCAGCAGGTGATGATTGACAAAATATCTGAAGGCCCCATTAATATATTCCTTATAGGATCACACACAAATTTTGCTATTTTGCTCATGAGTAATCCACATCTAAAGAAGAATGTTGAGCATATTTATGTTATGGGTGGTGGTATAAGATCAGAGAACCCAACTGGCTGCTGTCCAGAAAATGCCAGCAGATCTTGCATTCCTCGACAATGCGGCGATCCTGGTAACATATTCACAGATTACACTAGTAATCCTTATGCAGAATTCAATATCTTTGGAGACCCTTTTGCAGCATATCAGGTGATCCATTCTGGAATTCCGCTCACCATTGTTCCTCTGGATGCTACAGACACCATTCCCGTAACTAAGACTTTCTTTGAAGTATTTGAGCAGAATCATGGTACAGTTGAGGCACAATATGCATTCCAAACCTTGAAAATAGCTCGTGATTCTCGGCTTGGCGAGCAATTCTATACAACTTATTTCATGTGGGATTCTTTCGCATCTGGTGTGGCAACATCTATCATGCGTAACTCACATACCGATGATGGTCAAAATGATTTTGCTATGATGGAGTACATGAATATAACTGTAGTTACTTCAAATAAACCGTATGGTAAATCTGATGAGTCAAATCCATTCTTTTATGGACGTCAAGTTCCAAAATTTGATCTTGAAGAAGGTGGGGTACACAGTGGGCATGTTCAGACAGGGCTTCGAGATCCCTTTTGTATTGCGAGTAATGGGAAAGGGAAATGTCAGGATGGTTATACAGCAGAGGTAATGGGTCCAGAAGGAGTGCATGTTTTGGTTGCTACAAGAGCAAAGTCCAACCGGAACATCTCCAGTCCTCTTGACAGAGAATTTTACGTAGGCTTCTTAGATGTTATTAACAGTCCTATAAACACAGGAAGATTCAATTTTACCACACAATTCCCATATTACGAACAAGTTATGTACAGACCAGATTTCAGAAATATTAAACTGGGGAAACCTGTTGTGATTGACATGGATATGAGCGCTGGAGACTTTCTAGCGTTATTCTATCTTTTGAAAGTACCTGTGGAAGTTATTGACATCAAGGCAATAATAGCCAGTCCAACAGGATGGGCAAATGCTGCAACAATAGATGTTATCTATGATCTACTGCATATGATGGGTCGAGATGACATACCAGTAGGTCTTGGAGACGTATTTGCAGTAAACCAATCAGATTCAATTTTGCCTATTGTTGGAGACTGTAAGTATGCTAAAGCCATTCCAAATGGATGTGGTGGATATTTGGACTCTGATACTCTCTATGGTCTTGCTCGTAATTTGCCCAGAAGCCCAAGAAGGTACGCAGCAGAACACCCAGTAAAACACGGAGCTCCTCAAAACTCTCAGCATGCTGAACTGAGACAACCTCTAGCCATGGAAATTTGGGAATCCATATTGACAGAACTGGAGCCAGGATCCAAGCTTTCAGTGCTTACCAATGGACCATTGACTAACTTAGCAAAGCTTATTACATCAAACAAAAACGCAAGCTCCGTTATTCAGGAAGTTTATATAGTTGGGGGGCACATCAAGGATGATGATATGGATAAAGGAAATGTCTTCACTGTTCCTTCAAATATATATGCAGAATTCAATATTTTCCTTGACCCCTTAGGTGCAAAGACTGTTTTCGAGTCAACAGTTAATATCACGCTTGTTCCCCTTGGCATTCAGCGATGTGTCAGCTCATTTGAAAATTTCTTAGAAACTCTCTGCAAGAAAAAAAGGACGCCCGAGCTTCTCTTTGCCCGTCGTTTGCTGTCAAGACTCTATCGCTTGAAGCAATCAGACATCTGTTATAAGCATGTGGATACTTTCTTGGGGGAACTTCTTGGTGCAGTAGTCCTAACTGAAGAAGGCCGTGTGGAGCCAGTTTTTCAATTCAGGCCTGTAAAAATCTTAGCAGCTGGTGTTGAATCTCAAGATGGCCAAACTGTCATCTATGAGAAGGGCGGGAAATTAATCCGAATACTGCAGAATTTGAACCAAACAGCCTACTTTGACCTATATGCAACCCGGCTAAGTGATAAGATACAATCTGCAGTGGTCAAAAGCTTTAATGACCAGATAAGAATGTGGAATAAACTGCGAAACCACACCTGTAATTATTGCCATGGGTCATGTGTTTGCTGA 2877 41.71 ICFGYSPETAIHSTLPFFTATICAPFSFHFVVFILLIVVLLLNRSCKLRKFQERQLIFRGVVNAEEMLLQRNFLVVLVLIGVVFGANLSVVKALPRRILLDTDVNTDDLFALLYLLKLNRSEFELEAITISANAWTSAGHAVNQIYDILYMMGRDDIAVGVGGEGGILDDGTIQPNVGGYISIIDQGLTTTGGCRYRQAIPLGIRGRLDADTNYGLRKAFLPQGSRKYNPLQQKTAQQVMIDKISEGPINIFLIGSHTNFAILLMSNPHLKKNVEHIYVMGGGIRSENPTGCCPENASRSCIPRQCGDPGNIFTDYTSNPYAEFNIFGDPFAAYQVIHSGIPLTIVPLDATDTIPVTKTFFEVFEQNHGTVEAQYAFQTLKIARDSRLGEQFYTTYFMWDSFASGVATSIMRNSHTDDGQNDFAMMEYMNITVVTSNKPYGKSDESNPFFYGRQVPKFDLEEGGVHSGHVQTGLRDPFCIASNGKGKCQDGYTAEVMGPEGVHVLVATRAKSNRNISSPLDREFYVGFLDVINSPINTGRFNFTTQFPYYEQVMYRPDFRNIKLGKPVVIDMDMSAGDFLALFYLLKVPVEVIDIKAIIASPTGWANAATIDVIYDLLHMMGRDDIPVGLGDVFAVNQSDSILPIVGDCKYAKAIPNGCGGYLDSDTLYGLARNLPRSPRRYAAEHPVKHGAPQNSQHAELRQPLAMEIWESILTELEPGSKLSVLTNGPLTNLAKLITSNKNASSVIQEVYIVGGHIKDDDMDKGNVFTVPSNIYAEFNIFLDPLGAKTVFESTVNITLVPLGIQRCVSSFENFLETLCKKKRTPELLFARRLLSRLYRLKQSDICYKHVDTFLGELLGAVVLTEEGRVEPVFQFRPVKILAAGVESQDGQTVIYEKGGKLIRILQNLNQTAYFDLYATRLSDKIQSAVVKSFNDQIRMWNKLRNHTCNYCHGSCVC 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11268025 11277872 + Cp4.1LG03g11160.1 Cpe03g01397 467114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01397 958 Gene3D - 566 924 IPR036452 GO:0016799
Cpe03g01397 958 Gene3D - 86 447 IPR036452 GO:0016799
Cpe03g01397 958 PANTHER INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE 78 945 - -
Cpe03g01397 958 PANTHER INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE FAMILY PROTEIN 78 945 - -
Cpe03g01397 958 SUPERFAMILY Nucleoside hydrolase 566 922 IPR036452 GO:0016799
Cpe03g01397 958 Pfam Inosine-uridine preferring nucleoside hydrolase 568 915 IPR001910 GO:0016799
Cpe03g01397 958 Pfam Inosine-uridine preferring nucleoside hydrolase 98 435 IPR001910 GO:0016799
Cpe03g01397 958 SUPERFAMILY Nucleoside hydrolase 95 441 IPR036452 GO:0016799
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01397 - - - csv:101216049 1604.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01397 Cpe-Chr3:11268025 Cpe04g00137 Cpe-Chr4:1275069 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g387 . . . . . . . . . . . Cma14g01653 . Car14g01487 . . Cpe03g01397 . . . . . . . . . . . . . . . . Cone7ag0188 . Lsi05g01487 . . Cme06g00677 . Blo07g00194 . . . Bpe13g00641 . Bma06g01525 . . Cmo14g01697 . . . . . . . . . . . . . Cla05g00603 Cam05g0664 Cec05g0673 Cco05g0668 Clacu05g0658 Cmu05g0627 Cre05g0696 . Csa03g01402 Chy06g00645 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001428 0 17 1 1 1 2 2 2 2 2 2 1 2 2 2 2 2 3 2 2 2 2 3 3 3 2 2 2 3 2 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01397 Cpe_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0