Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01402 ATGGTTATACTGAGATTCGAGTGGAAAATGGCATCAATGGTCGTTAAGCCGAGTTGTTCTAGCACTATCAATCACGGGCCTTCCTCGATGACTGCCCAGGAAAAAGGGAGTAGGAATAAGAGGAAGTACAGAGCAGATCCACCTTTAGGTGATCTGAGTAAGATCGCCTCGTCATCTCAAGATGAATGCTCGAGTTATGAGTTTTCAGCCGAGAAATTTGAGAATAGTTCAAGTTTGGGGCAAACCAATGCGTGTGACCTTTGTAGCATTGGTCCAGAATTTTCTGCTGGATTGAAACTTGATCTTGGATTGTCCAATGGAAGCTCTTCTGACGTTGGGCTAAACTGGCCAAGTGGGGAATCAGAAGTTGATGAGTTCCAAGATGTTGATTGGAGTGACCTTACAGAAGCTCAGCTCGAAGAACTAATTTTAAATAATTTGGACACAATATTCAAGAGTGCAATCAAGAAAATCATTGCTTCTGGATACACTGAAGAGGTTTCGATAAAAGCTGTATCGAGGTCCGGCATTTGTTTTGGTTGTAAGGATACACTATCAAATATAGTGGATAACACCTTAGCTTTCCTTAAAAGTGACCAAGAAATTGATCATTCAGGGGAACACTATTTTGAAGATTTACAGCAACTAGAAAAATATATTTTAGCCGAATTAGTTTGTGTTCTACGAGAGGTTAAGCCTTTCTTCAGCACTGGCGATGCAATGTGGTGGTTATTGATTAGTGACATGAATGTATCTCTAGCATGTGCAGTGGATATTGACCCATTTGATGCACTTGTCTGTGATGGGACTTCGAACGAGAGCTCGTGTGACTCTATCCCACAGTTAAAACCAGAGGCTAAAGGCTCTGAGATGAATCTACCTAAGCCTGTTAAGCCAATTTCTCCAATCAGCTGTGCTCATGCTTCTCAATCTGATGGACCAGCCACTCTAGGAGTTCCTAGTATTGCAAAACCAAAGGACCCATTATTTTCAAGTGGACCATTATCAGATAAAGAATTGCAAAATTCGACCTCTGCTGCGGCTGAGGAATCATATAGTGTGGCTGGAAAGCCTCAAACTTCTGTGTCCGAAGAAAAAGTTGGGAGCAGTAGAAAGGGTCATTCTAATATATCTAAGAGAGAATACATGCTACGACAGAAGGCACTTCATGTGGATAAAAACTTTCGAACACATGGAACTAAGAGCTCATCAAGAGCTGGAAAGCTGACTGGTTTGGGGGGTTTAACGTTGGATAAGAAACTAAAATCTGTTTCAGGCTCCGCTTCAGTTAACTTTAAGAACGCTTCGCTGAAAATAAGCAAAGCCATGGGAATTGATGTGCCCCAAGACAATGGGAACGGTAATGTTTCCACCATCGACATTCCTTCTTCCTCTCCATCATTTAACTTGGAAAACATTAACACCGTTTCTCCTTTTTCTAAGACCAATGTATCTCCAATGCCCAGTCCTAGTTCACCCCCTGCATTACCTGCAGATAATACTTCTGGGCTACCAACAACTGATATTGATCTTTCTCTTTCTTTGCCCACTAAAAGCAATCAGCCCTCAGTGCCTATCAGCTGCAACGCTGAGTCTTCTACTAATAGTTTTGTTGAGAGACCTTATGACAAGTCCCTTGGACAGTGGTTTCCGAAGGATAAGAAGGATGAGATGGTTTTGAAGCTAGTACCAAGGGCTCGGGAATTACAAAGTCAGCTGCAAGAGTGGACGGAGTGGGCAAATCAAAAGGTCATGCAGGCTGCAAGGAGGCTAAGTAAGGACAAGGCTGAACTCAAGACTTTGAAACAAGAAAAGGATGAAGTTGAACGGCTGAAAAAGGAGAAGCAAACTCTGGAAGAAAATACCATGAAGAAACTTTCTGAGATGGAACATGCATTGTGCAAGGCTAGTGGTCAGGTTGAACTTGCTAACTCTGCTGTTAGGAGGCTTGAGATGGAGAATGCTGCACTACGGCAGGAGATGGAGGTTGCAAAATTACGTGCTGCAGAATCAGCTGCTAATTATCACGAGGTTTCTAAGAGGGAAAAGAAAACACTGATGAAAGTTCAATCTTGGGAGAAGCAGAAAATGTTGTTTCAGGAAGAACTCACAGCCGAAAAGCGGAAATTGAAACAACTAATACAGGAACTTGAGCATGCCAGGGATCTGCGGGAGCAACTTGAGGGTCGGTGGAAGTTGGAGGAGAGAGCAAAAGATGAGCTGCTCATGAAGGCTGCTTCATTGAGAAAGGAGAGAGAACAAATCGAAGATTCAGTGAAAGCAAAGGAGGATTCAATTAAATTGAAAGCAGAAAACAATCTTTTAAAATACAAAGACGATATCCAAAAGCTTGAAAAAGAAATCTATGCGTTGAGACTTAAGACTGATTCTTCAAGAATTGCAGCTCTTAAGAGAGGCATTGACGGAAGTTATGCCAGTAGACTTACAGATACCAGACATAGCACAGATCACAAAGAGTCTTCGACCCCGAATGCCTTGGAATCGATGAAGGATCTGTACGAGTACTCTGGAACTGGGGGTGTGAAGCGGGAACGGGAGTGTGTGATGTGCCTTTCAGAGGAGATGTCAGTAGTTTTTCTTCCATGCGCCCATCAGGTGGTGTGCACAACCTGCAATGAACTACATGAAAAACAGGGTATGAAAGATTGTCCTTCTTGTAGGAGCCCAATACAGCGGCGTATTCCAGTTCGTTATGTTCGCTCGTAA 2727 42.83 MVILRFEWKMASMVVKPSCSSTINHGPSSMTAQEKGSRNKRKYRADPPLGDLSKIASSSQDECSSYEFSAEKFENSSSLGQTNACDLCSIGPEFSAGLKLDLGLSNGSSSDVGLNWPSGESEVDEFQDVDWSDLTEAQLEELILNNLDTIFKSAIKKIIASGYTEEVSIKAVSRSGICFGCKDTLSNIVDNTLAFLKSDQEIDHSGEHYFEDLQQLEKYILAELVCVLREVKPFFSTGDAMWWLLISDMNVSLACAVDIDPFDALVCDGTSNESSCDSIPQLKPEAKGSEMNLPKPVKPISPISCAHASQSDGPATLGVPSIAKPKDPLFSSGPLSDKELQNSTSAAAEESYSVAGKPQTSVSEEKVGSSRKGHSNISKREYMLRQKALHVDKNFRTHGTKSSSRAGKLTGLGGLTLDKKLKSVSGSASVNFKNASLKISKAMGIDVPQDNGNGNVSTIDIPSSSPSFNLENINTVSPFSKTNVSPMPSPSSPPALPADNTSGLPTTDIDLSLSLPTKSNQPSVPISCNAESSTNSFVERPYDKSLGQWFPKDKKDEMVLKLVPRARELQSQLQEWTEWANQKVMQAARRLSKDKAELKTLKQEKDEVERLKKEKQTLEENTMKKLSEMEHALCKASGQVELANSAVRRLEMENAALRQEMEVAKLRAAESAANYHEVSKREKKTLMKVQSWEKQKMLFQEELTAEKRKLKQLIQELEHARDLREQLEGRWKLEERAKDELLMKAASLRKEREQIEDSVKAKEDSIKLKAENNLLKYKDDIQKLEKEIYALRLKTDSSRIAALKRGIDGSYASRLTDTRHSTDHKESSTPNALESMKDLYEYSGTGGVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPVRYVRS 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11305170 11310145 - Cp4.1LG03g10980.1 Cpe03g01402 467119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01402 908 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 826 904 IPR013083 -
Cpe03g01402 908 MobiDBLite consensus disorder prediction 496 528 - -
Cpe03g01402 908 Coils Coil 584 628 - -
Cpe03g01402 908 MobiDBLite consensus disorder prediction 479 528 - -
Cpe03g01402 908 Pfam Family of unknown function (DUF6592) 146 257 IPR046527 -
Cpe03g01402 908 Coils Coil 767 794 - -
Cpe03g01402 908 SUPERFAMILY RING/U-box 849 902 - -
Cpe03g01402 908 MobiDBLite consensus disorder prediction 22 47 - -
Cpe03g01402 908 Coils Coil 738 765 - -
Cpe03g01402 908 PANTHER OS05G0141500 PROTEIN 20 906 - -
Cpe03g01402 908 Coils Coil 689 730 - -
Cpe03g01402 908 Pfam Zinc finger, C3HC4 type (RING finger) 851 899 - -
Cpe03g01402 908 MobiDBLite consensus disorder prediction 335 366 - -
Cpe03g01402 908 ProSiteProfiles Zinc finger RING-type profile. 854 894 IPR001841 -
Cpe03g01402 908 PANTHER OS05G0141500 PROTEIN 20 906 IPR046934 -
Cpe03g01402 908 Coils Coil 640 674 - -
Cpe03g01402 908 MobiDBLite consensus disorder prediction 271 380 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01402 - - - csv:101214366 1470.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01402 Cpe08g00228 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01402 Cpe-Chr3:11305170 Cpe18g00744 Cpe-Chr18:7220515 1.03E-06 dispersed
Cpe14g00951 Cpe-Chr14:8023025 Cpe03g01402 Cpe-Chr3:11305170 2.55E-82 transposed
Cpe03g01402 Cpe-Chr3:11305170 Cpe08g00228 Cpe-Chr8:1514081 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g397 . . . . . Bpe14g01163 . . . . . Cma14g01661 Car06g01249 Car14g01494 . Cpe08g00228 Cpe03g01402 Bhi01g00890 . . . Hepe05g1501 . Lcy11g1476 . . . . . . . . . . . Lsi05g01477 . . Cme06g00668 . . . . . Bpe13g00635 . Bma06g01529 . . Cmo14g01705 . . . . . . . . . . . . . Cla05g00597 Cam05g0657 Cec05g0664 Cco05g0661 Clacu05g0650 Cmu05g0619 Cre05g0688 . Csa03g01393 Chy06g00636 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004013 2 1 1 2 2 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 3 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01402 Cpe_Chr03 FPKM 0.0 0.0 0.0 1.217306 0.0 0.37709 0.0 1.140317 0.33073 0.34845