Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01403 ATGGCTGCCCCATCAGCACCAAATTCGGTTCAGAAATCGGAGGAAGAGTGGCGGGTTATACTCTCTCCGGAGCAGTTTCGCATTCTTCGCCAGAAAGGAACTGATCTGGTCCATTGTTTCGTGAAGTTGTTGGAAAATGTCAGTAATAGCAGTAGTAATAGCATTATCAATAGGCTTCGAGGCACTGGGAAATATGACAAGTTTTATGAAGAAGGAATATACAACTGTGCTGGCTGTGGAACCCCACTTTACAAGTCCAGCACCAAATTCAATTCTGGCTGTGGCTGGCCTGCTTTCTTTGAGGGCTTTCCTGGAGCAATCAATCGTTTTCCCGACCCTGATGGAAGGCGAACTGAAATAACTTGTGCTGCATGTGGGGGGCATTTGGGTCACGTTTTTAAAGGCGAGGGATTCGGGACACCTACAGATGAACGCCATTGTGTCAACAGCATTTCGGTCAAGTTCGCTCCTGCTAATGCTTCACAGTGA 489 47.24 MAAPSAPNSVQKSEEEWRVILSPEQFRILRQKGTDLVHCFVKLLENVSNSSSNSIINRLRGTGKYDKFYEEGIYNCAGCGTPLYKSSTKFNSGCGWPAFFEGFPGAINRFPDPDGRRTEITCAACGGHLGHVFKGEGFGTPTDERHCVNSISVKFAPANASQ 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11313226 11315532 - Cp4.1LG03g10970.1 Cpe03g01403 467120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01403 162 Gene3D Peptide methionine sulfoxide reductase. 2 161 - -
Cpe03g01403 162 PANTHER - 8 36 IPR028427 GO:0006979|GO:0016671|GO:0030091
Cpe03g01403 162 PANTHER - 56 161 IPR028427 GO:0006979|GO:0016671|GO:0030091
Cpe03g01403 162 SUPERFAMILY Mss4-like 61 159 IPR011057 -
Cpe03g01403 162 PANTHER PEPTIDE METHIONINE SULFOXIDE REDUCTASE B4-RELATED 8 36 - -
Cpe03g01403 162 PANTHER PEPTIDE METHIONINE SULFOXIDE REDUCTASE B4-RELATED 56 161 - -
Cpe03g01403 162 Pfam SelR domain 61 157 IPR002579 GO:0033743
Cpe03g01403 162 ProSiteProfiles Methionine-R-sulfoxide reductase (MsrB) domain profile. 14 158 IPR002579 GO:0033743
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01403 K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] - csv:101213968 275.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01403 Cpe-Chr3:11313226 Cpe04g00357 Cpe-Chr4:4218064 3.06E-73 dispersed
Cpe03g01403 Cpe-Chr3:11313226 Cpe15g00397 Cpe-Chr15:5166582 1.00E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g399 . . . . . . . . . . . Cma14g01662 . Car14g01495 Sed02g1286 . Cpe03g01403 Bhi01g00887 Tan10g0913 Cmetu06g0354 . Hepe05g1503 . Lcy11g1478 . . . . . . . . Cone15ag0804 . . Lsi05g01475 . . Cme06g00666 . Blo07g00198 Bda11g00551 . . Bpe13g00634 . Bma06g01530 . . Cmo14g01706 . . . . . . . . . . . . . Cla05g00595 Cam05g0655 Cec05g0663 Cco05g0659 Clacu05g0648 Cmu05g0617 Cre05g0685 . Csa03g01391 Chy06g00634 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002864 2 2 1 2 1 1 3 1 2 2 1 1 2 2 2 3 1 2 3 2 2 2 2 1 2 2 2 2 2 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01403 Cpe_Chr03 FPKM 37.099415 38.380188 56.606075 49.712578 12.86182 22.346901 14.314528 52.922493 60.189323 57.888588