Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01411 ATGGGCACAATTAAACCGTTTAGGGAATCCTCTAAAGCCTCTTTGAATTCTTCTCATCCTCCGCCGGTGACTTCCTCTACCGCTCGATTCGAGACCGTTAATGTTTCGCATGATTTCAAGATCAATGGGTATTCCCTCAACAAAGGTATGGGAATTGGGAAATACATTACATCGGATACGTTTGTCGTCGGTGGGTACGAGTGGGCTATCTATTTCTATCCCGATGGTAAGAGTATGGAGGACAACGCGGCTTACGTCTCTATTTTCATAGCGCTTGTCAGCGATGGCGCCGATGTTAGGGCTCTTTTTGAATTGACGCTTTTCGATCAAAGTGGAAAGGGGAATCATAAGGTTCATAGCCATTTTGAAAGGAGGCTGGAGAGCGGTCCGTACACCCTCAAGTATCGTGGAAGCATGGGTTATAAACGTTATTTCAAAAGAACGGTTCTGGAGTCGTCAGATTACCTTAAAGATGATTGCCTCTCATTTAAATGTGTTGTTGGGGTTGTTAAATCACAAACGGAGGGGCCTAAAATCTATTCTATAACAGCACCTCCCTCTGACATCGGTCAGCAATTTGGGAAGCTTTTGGAAAGTCGTAAGTGTGCGGATGTTAATTTTGAAGTAGATGGTGAAATATTTGCAGCACACAAATTGGTCATTGCAGCACGTTCACCTGTATTCAGGGCACAACTTTTTGGCCCATTGAAGGATAAGGATACTCGATGCATTAAGGTTGAGGACATTGAGGCTCCTGTATTTAAGCCGTGA 771 44.1 MGTIKPFRESSKASLNSSHPPPVTSSTARFETVNVSHDFKINGYSLNKGMGIGKYITSDTFVVGGYEWAIYFYPDGKSMEDNAAYVSIFIALVSDGADVRALFELTLFDQSGKGNHKVHSHFERRLESGPYTLKYRGSMGYKRYFKRTVLESSDYLKDDCLSFKCVVGVVKSQTEGPKIYSITAPPSDIGQQFGKLLESRKCADVNFEVDGEIFAAHKLVIAARSPVFRAQLFGPLKDKDTRCIKVEDIEAPVFKP 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11359046 11364974 + Cp4.1LG03g11080.1 Cpe03g01411 467128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01411 256 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 19 255 IPR045005 GO:0016567
Cpe03g01411 256 SUPERFAMILY POZ domain 180 255 IPR011333 -
Cpe03g01411 256 SMART math_3 39 150 IPR002083 GO:0005515
Cpe03g01411 256 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 32 170 IPR008974 GO:0005515
Cpe03g01411 256 MobiDBLite consensus disorder prediction 9 27 - -
Cpe03g01411 256 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 2-LIKE 19 255 - -
Cpe03g01411 256 Pfam BTB/POZ domain 194 255 IPR000210 GO:0005515
Cpe03g01411 256 ProSiteProfiles BTB domain profile. 203 256 IPR000210 GO:0005515
Cpe03g01411 256 MobiDBLite consensus disorder prediction 1 27 - -
Cpe03g01411 256 CDD MATH 36 167 IPR002083 GO:0005515
Cpe03g01411 256 SUPERFAMILY TRAF domain-like 31 173 - -
Cpe03g01411 256 ProSiteProfiles MATH/TRAF domain profile. 34 167 IPR002083 GO:0005515
Cpe03g01411 256 Gene3D Potassium Channel Kv1.1; Chain A 171 256 IPR011333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01411 K10523 SPOP; speckle-type POZ protein - csv:101211721 483.411
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01411 Cpe17g00118 CCT
Cpe03g01411 Cpe12g00232 CCT
Cpe03g01411 Cpe12g00232 ECH
Cpe03g01411 Cpe17g00118 ECH
Cpe03g01411 Cpe08g00234 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01411 Cpe-Chr3:11359046 Cpe18g00106 Cpe-Chr18:2692804 3.78E-105 dispersed
Cpe12g00232 Cpe-Chr12:1551822 Cpe03g01411 Cpe-Chr3:11359046 4.35E-149 wgd
Cpe17g00118 Cpe-Chr17:732694 Cpe03g01411 Cpe-Chr3:11359046 6.34E-155 wgd
Cpe03g01411 Cpe-Chr3:11359046 Cpe08g00234 Cpe-Chr8:1537932 2.68E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g416 . . Bda03g01295 . . . . . Cmo08g01149 Cmo17g00266 Cma06g01441 Cma14g01672 Car06g01243 Car14g01506 . Cpe08g00234 Cpe03g01411 Bhi01g00869 Tan10g0903 . Lac12g2339 . . Lcy11g1490 Cla06g00536 Cam06g0578 Cec06g0575 Cco06g0583 Clacu06g0565 Cmu06g0559 Cre06g1327 Cone14ag0811 Cone15ag0810 . . Lsi05g01464 . Chy11g01439 Cme06g00654 . . . . . . . . . Cmo06g01443 Cmo14g01718 Cma08g01178 Cma17g00279 Car08g01054 Car17g00254 Cpe12g00232 Cpe17g00118 Bhi12g01786 . . . . . . Cla05g00586 Cam05g0644 Cec05g0653 Cco05g0648 Clacu05g0638 Cmu05g0606 Cre05g0675 Lsi09g01366 Csa03g01380 Chy06g00622 Cme11g01944
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001625 1 3 2 1 2 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 3 2 2 2 3 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49261 PF00651 BTB 9.90E-11 CL0033 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01411 Cpe_Chr03 FPKM 21.147877 21.594599 24.46559 23.705469 21.500399 19.627182 23.514614 24.59033 25.248541 25.839994