Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01413 ATGAATCTCTCGCTTTCTTCTTCCTCCCCACCTTCAAATCCTGCCGTTTCTACATCTTCTTCTTCCTCTTCCTCCTCGTCGTCGGCGACCACTTCATGGATCTCTGTCATTATTCGCGGCCGTTTCGATAGTTCAGCCAGCATGAAAACATCGGCGAACTCTGCCTCCGTCTCTCCTGCCGAGGATTCCCCTGGTCCTGTCGTGAAAAAGAACAATTTCCATGGCTTGCTCTTCAAGTATGGTCCCAAGCCGATTCAGGTTGCATTTAAGACGGGGGATTACAAACAGCAAGTCATATTTATTGGTGGATTGAGTGATGGCTTTATGGCAACAGAATATTTGGAACCTCTTGCAATTGCTTTGGATAAAGAAGAATGGTCCCTTGTTCAGATACTTCTGTCATCATCGTATAATGGATATGGTACCTCCAGCTTGCAACAAGATGCTAAGGAGCTTGATCAGCTAGTAAGTTATCTGATTAATAAAGAAGACTCTGAGGGGGTTGTGTTACTTGGACATAGTACTGGCTGTCAGGTAATTGCTCAATCTTGCTCTCGAGCAGTTCGTGGCGCCATTTTCCAGGCTCCAGTTAGTGGTCGAGAGTATAGAGCAACTCTTCCTGAAACAGCAGCCATGATTGACTTGGCTTCAACTATGATAAGCGAAGGTAGAGGATCATATCTTATGCCAAGAGAGGCAAGCCCATCTTCTCCAATAACTGCTAACAGGTATTATTCCATTTGCTCGTACATGGGGGATGATGACATGTTCAGCTCTGACCTTAGCGATGAGCAGCTGAAAATGAAACTTGGGCACATGGCTAATACTCCATGCCAGGTTATCTTTTCGATGCGAGACGAATACGTGCCAGAATATGTGGATAAGAAAGCATTGGTTGCTAGAGTGTGCAAAGCAATGGGAGGTGCAGAGAAAATTGAAATTGAGCATGCCAATCATTCTCTCTCCAACAGAGTTGATGAAGCAGTGGAGGTCATGGTCGACTTTGTCCGGAGGGAGGGCCCTAAGGGCTGGGATGATCCATGGCATTAG 1050 46.0 MNLSLSSSSPPSNPAVSTSSSSSSSSSSATTSWISVIIRGRFDSSASMKTSANSASVSPAEDSPGPVVKKNNFHGLLFKYGPKPIQVAFKTGDYKQQVIFIGGLSDGFMATEYLEPLAIALDKEEWSLVQILLSSSYNGYGTSSLQQDAKELDQLVSYLINKEDSEGVVLLGHSTGCQVIAQSCSRAVRGAIFQAPVSGREYRATLPETAAMIDLASTMISEGRGSYLMPREASPSSPITANRYYSICSYMGDDDMFSSDLSDEQLKMKLGHMANTPCQVIFSMRDEYVPEYVDKKALVARVCKAMGGAEKIEIEHANHSLSNRVDEAVEVMVDFVRREGPKGWDDPWH 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11372280 11375814 + Cp4.1LG03g11090.1 Cpe03g01413 467130

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01413 349 Gene3D alpha/beta hydrolase 75 343 IPR029058 -
Cpe03g01413 349 MobiDBLite consensus disorder prediction 1 30 - -
Cpe03g01413 349 SUPERFAMILY alpha/beta-Hydrolases 115 338 IPR029058 -
Cpe03g01413 349 PANTHER UPF0613 PROTEIN PB24D3.06C 15 348 IPR013744 -
Cpe03g01413 349 Pfam Protein of unknown function (DUF1749) 73 335 IPR013744 -
Cpe03g01413 349 PANTHER BNAC09G38800D PROTEIN 15 348 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01413 - - - csv:101211227 560.451
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01413 Cpe08g00237 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01413 Cpe-Chr3:11372280 Cpe08g00237 Cpe-Chr8:1557051 7.47E-172 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g428 . . . . . . . . . . Cma06g01438 Cma14g01674 Car06g01240 Car14g01508 Sed02g1276 Cpe08g00237 Cpe03g01413 Bhi01g00863 Tan10g0895 Cmetu06g0203 . Hepe05g1518 . Lcy11g1502 . . . . . . . . . Cone7ag0212 Cone4ag0203 Lsi05g01460 . . Cme06g00650 . Blo07g00205 Bda11g00558 . . Bpe13g00625 . . . Cmo06g01440 Cmo14g01719 . . . . . . . . . . . . . Cla05g00582 Cam05g0640 Cec05g0649 Cco05g0644 Clacu05g0634 Cmu05g0602 Cre05g0671 . Csa03g01376 Chy06g00619 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008855 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01413 Cpe_Chr03 FPKM 6.910623 8.203503 1.861381 1.608954 22.007299 16.70546 17.426289 24.473085 26.102659 23.677011