Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01417 ATGGCCTCAAATAATACCAATCCAATCCCCACCGCCGTCTCCGACAACAATGGCCTCTTGTGCTCCCCACAACCCACGATAATGGACCATAATCCAGCTCGCCCGGTTTTGGGAGAGATGATGGGGACTTTTTTGCTAATGATTTGCGTGAGTGGAGTGGCGGCGACCGGCCAGATGATGGGCGGTCAGGTGGGTTTATTGGACTACGCCGCCGCCGCCGGGTTGACTGTCGGCGTTCTGACATTCTGCTTTGCTCCCATTTCCGGTGCTCATTTCAACCCTGCCATCACTCTTGCCTCTGCCATTTTTGGCCACTTTCCATGGTCCTGGGTGATGCCGTACACGGTGGCTCAGACGACAGGTTGTGTAATGGCGACATATGCAGGAATGTTCGTTTACGACATTAAACCACAACAATTGACCACTCGACCATTTCGTGGCTCCATGTCTGCCTTCTTCGTTGAGCTTCTTGCAACCTTCATCCTCATGTTCCTCATTTCTTCTTTACCCCATCAATCCCGACCCCGACCCGGTGGTCAATTGTCCGGCTTTGTCATTGGAATGGCCATCGGACTTGCTGTGTTTATTGCCGGGCCCATTTCAGGTGGATCGATGAACCCAGCAAGATCCTTAGGGCCCGCAATAGTTTCATGGGCTTTCGATGACATATGGATATATATTACAGCTCCGGTCATCGGAGCTGTTACCGGTGCCTTCTTCAGCGGCGTCCTCCGCCTTCATCCTCCGCCGATCCATTCTTCCGACGGCGGAAATTTCCGTCGCTCCTCCTCAGCCAACTTACATTTAATTCCTTAG 816 52.57 MASNNTNPIPTAVSDNNGLLCSPQPTIMDHNPARPVLGEMMGTFLLMICVSGVAATGQMMGGQVGLLDYAAAAGLTVGVLTFCFAPISGAHFNPAITLASAIFGHFPWSWVMPYTVAQTTGCVMATYAGMFVYDIKPQQLTTRPFRGSMSAFFVELLATFILMFLISSLPHQSRPRPGGQLSGFVIGMAIGLAVFIAGPISGGSMNPARSLGPAIVSWAFDDIWIYITAPVIGAVTGAFFSGVLRLHPPPIHSSDGGNFRRSSSANLHLIP 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11397865 11399536 + Cp4.1LG03g10920.1 Cpe03g01417 467134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01417 271 Pfam Major intrinsic protein 33 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe03g01417 271 Gene3D Glycerol uptake facilitator protein. 22 247 IPR023271 -
Cpe03g01417 271 PRINTS Major intrinsic protein family signature 34 53 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe03g01417 271 PRINTS Major intrinsic protein family signature 73 97 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe03g01417 271 PRINTS Major intrinsic protein family signature 110 129 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe03g01417 271 PRINTS Major intrinsic protein family signature 154 172 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe03g01417 271 PRINTS Major intrinsic protein family signature 187 209 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe03g01417 271 PRINTS Major intrinsic protein family signature 224 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe03g01417 271 ProSitePatterns MIP family signature. 91 99 IPR022357 -
Cpe03g01417 271 PANTHER AQUAPORIN NIP2-1 16 263 IPR034294 -
Cpe03g01417 271 SUPERFAMILY Aquaporin-like 30 249 IPR023271 -
Cpe03g01417 271 PANTHER AQUAPORIN NIP7-1-RELATED 16 263 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01417 K09874 NIP; aquaporin NIP - csv:101203206 376.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01417 Cpe-Chr3:11397865 Cpe19g01091 Cpe-Chr19:7401374 4.41E-44 dispersed
Cpe03g01417 Cpe-Chr3:11397865 Cpe19g01089 Cpe-Chr19:7398581 2.12E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g437 . . . . . . . Bma05g00938 . . . Cma14g01679 . Car14g01513 . . Cpe03g01417 Bhi01g00854 . . . . . Lcy11g1511 . . . . . . . . . . Cone4ag0210 Lsi05g01452 . . Cme06g00639 . . . . Bpe05g00748 . . . . . Cmo14g01724 . . . . . . . . . . . . . Cla05g00575 Cam05g0630 Cec05g0641 Cco05g0635 Clacu05g0626 Cmu05g0594 Cre05g0662 . Csa03g01364 Chy06g00608 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010672 2 2 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01417 Cpe_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0