Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01419 ATGTTGGCTTCCTCGGCTGTGTTTAGAAGACAACAGTTCTTGATAAGGTCTCTTGGAGGTTTTGGTGATTGTACTCATCAGAATAGGCGGCAACAAATCAAAGCCATGAGTGGGACTTCTATGGAGGCTGATGCTGAGAACATTCTAAGAGCTATTACACCTAGCCTTGATCCCAAAAGATATAAAGGCCAGGCGGGGAAGATAGCTGTTATTGGTGGATGTCGTGAGTACACAGGTGCTCCCTATTTCGCTGCTATATCAGCATTGAAAATTGGTGCAGATTTATCTCATGTTTTCTGCACTAAAGATGCTGCTCCTGTCATAAAGAGCTATAGTCCAGAGTTAATTGTGCATCCTGTTCTGGAAGAATCATACAGTGTCAGAGATGAGGAAAAGAAGTTCACTGCAGAAAGGGTTCTTGCTGAGGTTGACAAGTGGCTTGAAAGATTCGATTGTCTTGTCATTGGTCCTGGCCTTGGAAGAGACCCGTTTCTTCTGGAATGTGTCAGTGAAATCATAAAGCATGCAAGGCAGACCAATATACCAATGATCATAGACGGGGATGGTCTCTTTCTTATCACGGACAATCTTCACCTTGTAAGCAATTACCCCTTGGCAGTCCTGACACCAAATGTAAATGAATATAAGCGTCTCGTGAAAAATGTACTGCTTGCTGAAGTCGATGAACAAGATGCTCCTAACCAATTGCTGTCTCTTACCAAAAGGATTGGTGGCCTAACTATTCTCAGGAAAGGGAGAGCTGACCTCATCTGTGACGGTGAGACAGTCAAATCAGTGAGCATTTATGGTTCTCCTCGCCGTTGTGGTGGCCAAGGTGATATACTTTCAGGAAGGCAAGTAGTGCTATGGGTTTTCATTGTTCTTGGTGAATATTGTTTTTCTAACAAAATTGACCTTATTTATTTTCCTAATCCAAATTCGAGAAGCCTAAACTTCTGTACAATAAGTCCAAAGAATCCAACAGTATTAGGTTGCATTGCTGGATCTGCTTTACTTAGAAAGGCTGCATCACTTGCATTTGAGAACAAGAAAAGATCAACCCTTACTACTGATATCATCGAGTTCTTGTGGAGAAGTCTGGAAGACATTTCTCCAGCTCACTAG 1125 42.31 MLASSAVFRRQQFLIRSLGGFGDCTHQNRRQQIKAMSGTSMEADAENILRAITPSLDPKRYKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPVLEESYSVRDEEKKFTAERVLAEVDKWLERFDCLVIGPGLGRDPFLLECVSEIIKHARQTNIPMIIDGDGLFLITDNLHLVSNYPLAVLTPNVNEYKRLVKNVLLAEVDEQDAPNQLLSLTKRIGGLTILRKGRADLICDGETVKSVSIYGSPRRCGGQGDILSGRQVVLWVFIVLGEYCFSNKIDLIYFPNPNSRSLNFCTISPKNPTVLGCIAGSALLRKAASLAFENKKRSTLTTDIIEFLWRSLEDISPAH 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11403248 11411208 - Cp4.1LG03g10820.1 Cpe03g01419 467136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01419 374 PANTHER ATP-DEPENDENT (S)-NAD(P)H-HYDRATE DEHYDRATASE FAMILY MEMBER 3 372 - -
Cpe03g01419 374 SUPERFAMILY Ribokinase-like 47 368 IPR029056 -
Cpe03g01419 374 Hamap ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 45 372 IPR000631 GO:0016836
Cpe03g01419 374 CDD YXKO-related 58 361 IPR000631 GO:0016836
Cpe03g01419 374 PANTHER ATP-DEPENDENT (S)-NAD(P)H-HYDRATE DEHYDRATASE 3 372 - -
Cpe03g01419 374 Pfam Carbohydrate kinase 69 285 IPR000631 GO:0016836
Cpe03g01419 374 TIGRFAM yjeF_cterm: YjeF family C-terminal domain 51 284 IPR000631 GO:0016836
Cpe03g01419 374 ProSiteProfiles YjeF C-terminal domain profile. 45 370 IPR000631 GO:0016836
Cpe03g01419 374 Gene3D - 44 370 IPR029056 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01419 K17757 CARKD; ATP-dependent NAD(P)H-hydrate dehydratase [EC:4.2.1.93] - csv:101209583 619.387
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g442 . . . . . Bpe14g01317 . . . . . Cma14g01681 . Car14g01515 . . Cpe03g01419 Bhi01g00850 . . . . . . . . . . . . . . . Cone7ag0220 Cone4ag0212 Lsi05g01449 . . Cme06g00636 . . . . . . Bma02g00691 . . . Cmo14g01726 . . . . . . . . . . . . . Cla05g00573 Cam05g0628 Cec05g0639 Cco05g0633 Clacu05g0624 Cmu05g0592 Cre05g0660 . Csa03g01361 Chy06g00606 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005984 1 4 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 2 2 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01419 Cpe_Chr03 FPKM 21.213514 23.019011 22.939236 21.654243 9.73671 8.451736 9.990842 20.0578 20.348675 22.924599